Jelmer Wolterink

Dr. Jelmer Wolterink


Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 May 2018 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
OBOlivier Bernard
Olivier Bernard
Alain LalandeAlain Lalande
Alain Lalande
CZClement Zotti
Clement Zotti
FCFrederick Cervenansky
Frederick Cervenansky
XYXin Yang
Xin Yang
PJPierre-Marc Jodoin
Pierre-Marc Jodoin
Delineation of the left ventricular cavity, myocardium and right ventricle from cardiac magnetic resonance images (multi-slice 2D cine MRI) is a common clinical task to establish diagnosis. The automation of the corresponding tasks has thus been the subject of intense research over the past decades. In this paper, we introduce the “Automatic Cardiac Diagnosis Challenge” dataset (ACDC), the largest publicly-available and fully-annotated dataset for the purpose of Cardiac MRI (CMR) assessment. The dataset contains data from 150 multi-equipments CMRI recordings with reference measurements and classification from two medical experts. The overarching objective of this paper is to measure how far state-of-the-art deep learning methods can go at assessing CMRI, i.e. segmenting the myocardium and the two ventricles as well as classifying pathologies. In the wake of the 2017 MICCAI-ACDC challenge, we report results from deep learning methods provided by nine research groups for the segmentation task and four groups for the classification task. Results show that the best methods faithfully reproduce the expert analysis, leading to a mean value of 0.97 correlation score for the automatic extraction of clinical indices and an accuracy of 0.96 for automatic diagnosis. These results clearly open the door to highly-accurate and fully-automatic analysis of cardiac CMRI. We also identify scenarios for which deep learning methods are still failing. Both the dataset and detailed results are publicly available on-line, while the platform will remain open for new submissions.

26 May 2017 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
JWJelmer Wolterink
Jelmer Wolterink
TLTim Leiner
Tim Leiner
MVMax A. Viergever
Max A. Viergever
IIIvana Isgum
Ivana Isgum
Noise is inherent to low-dose CT acquisition. We propose to train a convolutional neural network (CNN) jointly with an adversarial CNN to estimate routine-dose CT images from low-dose CT images and hence reduce noise. A generator CNN was trained to transform low-dose CT images into routine-dose CT images using voxelwise loss minimization. An adversarial discriminator CNN was simultaneously trained to distinguish the output of the generator from routine-dose CT images. The performance of this discriminator was used as an adversarial loss for the generator. Experiments were performed using CT images of an anthropomorphic phantom containing calcium inserts, as well as patient non-contrast-enhanced cardiac CT images. The phantom and patients were scanned at 20% and 100% routine clinical dose. Three training strategies were compared: the first used only voxelwise loss, the second combined voxelwise loss and adversarial loss, and the third used only adversarial loss. The results showed that training with only voxelwise loss resulted in the highest peak signal-to-noise ratio with respect to reference routine-dose images. However, CNNs trained with adversarial loss captured image statistics of routine-dose images better. Noise reduction improved quantification of low-density calcified inserts in phantom CT images and allowed coronary calcium scoring in low-dose patient CT images with high noise levels. Testing took less than 10 s per CT volume. CNN-based low-dose CT noise reduction in the image domain is feasible. Training with an adversarial network improves the CNNs ability to generate images with an appearance similar to that of reference routine-dose CT images.

26 September 2017
Verified
Book Chapter
Closed access
PDF file
JWJelmer Wolterink
Jelmer Wolterink
ADAnna M. Dinkla
Anna M. Dinkla
MSMark H. F. Savenije
Mark H. F. Savenije
PSPeter R. Seevinck
Peter R. Seevinck
CBCornelis A. T. van Den Berg
Cornelis A. T. van Den Berg
IIIvana Išgum
Ivana Išgum

1 December 2016 in Medical Image Analysis
Verified
Journal Article
Closed access
JWJelmer Wolterink
Jelmer Wolterink
TLTim Leiner
Tim Leiner
BVBob De Vos
Bob De Vos
RHRobbert W. van Hamersvelt
Robbert W. van Hamersvelt
MVMax Viergever
Max Viergever
IIIvana Išgum
Ivana Išgum

28 November 2018 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
MZMajd Zreik
Majd Zreik
RHRobbert W. van Hamersvelt
Robbert W. van Hamersvelt
JWJelmer Wolterink
Jelmer Wolterink
TLTim Leiner
Tim Leiner
MVMax A. Viergever
Max A. Viergever
IIIvana Išgum
Ivana Išgum
Various types of atherosclerotic plaque and varying grades of stenosis could lead to different management of patients with a coronary artery disease. Therefore, it is crucial to detect and classify the type of coronary artery plaque, as well as to detect and determine the degree of coronary artery stenosis. This paper includes retrospectively collected clinically obtained coronary CT angiography (CCTA) scans of 163 patients. In these, the centerlines of the coronary arteries were extracted and used to reconstruct multi-planar reformatted (MPR) images for the coronary arteries. To define the reference standard, the presence and the type of plaque in the coronary arteries (no plaque, non-calcified, mixed, calcified), as well as the presence and the anatomical significance of coronary stenosis (no stenosis, non-significant, i.e., <50% luminal narrowing, and significant, i.e., ≥50% luminal narrowing) were manually annotated in the MPR images by identifying the start- and end-points of the segment of the artery affected by the plaque. To perform an automatic analysis, a multi-task recurrent convolutional neural network is applied on coronary artery MPR images. First, a 3D convolutional neural network is utilized to extract features along the coronary artery. Subsequently, the extracted features are aggregated by a recurrent neural network that performs two simultaneous multi-class classification tasks. In the first task, the network detects and characterizes the type of the coronary artery plaque. In the second task, the network detects and determines the anatomical significance of the coronary artery stenosis. The network was trained and tested using the CCTA images of 98 and 65 patients, respectively. For detection and characterization of coronary plaque, the method was achieved an accuracy of 0.77. For detection of stenosis and determination of its anatomical significance, the method was achieved an accuracy of 0.80. The results demonstrate that automatic detection and classification of coronary artery plaque and stenosis are feasible. This may enable automated triage of patients to those without coronary plaque and those with coronary plaque and stenosis in need for further cardiovascular workup.

2 October 2016
Verified
Book Chapter
Closed access
PDF file
PMPim Moeskops
Pim Moeskops
JWJelmer Wolterink
Jelmer Wolterink
BVBas H. M. van der Velden
Bas H. M. van der Velden
KGKenneth G. A. Gilhuijs
Kenneth G. A. Gilhuijs
TLTim Leiner
Tim Leiner
IIIvana Išgum
Ivana Išgum