Feng Zhang

Prof. Dr. Feng Zhang

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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19 March 2021 in GigaScience
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Journal Article
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ZFZheng Fan
Zheng Fan
TYTao Yuan
Tao Yuan
PLPiao Liu
Piao Liu
LWLu-Yu Wang
Lu-Yu Wang
JJJian-Feng Jin
Jian-Feng Jin
ZZZhisheng Zhang
Zhisheng Zhang
The spider Trichonephila antipodiana (Araneidae), commonly known as the batik golden web spider, preys on arthropods with body sizes ranging from ∼2 mm in length to insects larger than itself (>20‒50 mm), indicating its polyphagy and strong dietary detoxification abilities. Although it has been reported that an ancient whole-genome duplication event occurred in spiders, lack of a high-quality genome has limited characterization of this event. We present a chromosome‐level T. antipodiana genome constructed on the basis of PacBio and Hi-C sequencing. The assembled genome is 2.29 Gb in size with a scaffold N50 of 172.89 Mb. Hi‐C scaffolding assigned 98.5% of the bases to 13 pseudo-chromosomes, and BUSCO completeness analysis revealed that the assembly included 94.8% of the complete arthropod universal single-copy orthologs (n = 1,066). Repetitive elements account for 59.21% of the genome. We predicted 19,001 protein-coding genes, of which 96.78% were supported by transcriptome-based evidence and 96.32% matched protein records in the UniProt database. The genome also shows substantial expansions in several detoxification-associated gene families, including cytochrome P450 mono-oxygenases, carboxyl/cholinesterases, glutathione-S-transferases, and ATP-binding cassette transporters, reflecting the possible genomic basis of polyphagy. Further analysis of the T. antipodiana genome architecture reveals an ancient whole-genome duplication event, based on 2 lines of evidence: (i) large-scale duplications from inter-chromosome synteny analysis and (ii) duplicated clusters of Hox genes. The high-quality T. antipodiana genome represents a valuable resource for spider research and provides insights into this species’ adaptation to the environment.


6 January 2019 in Methods in Ecology and Evolution
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Journal Article
Closed access
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FZFeng Zhang
Feng Zhang
YDYinhuan Ding
Yinhuan Ding
CZChaodong Zhu
Chaodong Zhu
XZXin Zhou
Xin Zhou
MOMichael C. Orr
Michael C. Orr
YLYunxia Luan
Yunxia Luan

30 December 2022 in Cladistics
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Journal Article
Closed access
Nerivania Nunes GodeiroNerivania Nunes Godeiro
Nerivania Nunes Godeiro
YDYinhuan Ding
Yinhuan Ding
NCNikolas Gioia Cipola
Nikolas Gioia Cipola
SJSopark Jantarit
Sopark Jantarit
Bruno BelliniBruno Bellini
Bruno Bellini
FZFeng Zhang
Feng Zhang

13 May 2014 in Zoologica Scripta
Verified
Journal Article
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FZFeng Zhang
Feng Zhang
DYDaoyuan Yu
Daoyuan Yu
YLYongzheng Luo
Yongzheng Luo
SHSimon Y. W. Ho
Simon Y. W. Ho
Beixin WangBeixin Wang
Beixin Wang
CZChaodong Zhu
Chaodong Zhu

12 July 2021 in PLOS Genetics
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Journal Article
Open access
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YZYayun Zuo
Yayun Zuo
YSYu Shi
Yu Shi
FZFeng Zhang
Feng Zhang
FGFang Guan
Fang Guan
JZJianpeng Zhang
Jianpeng Zhang
Yidong WuYidong Wu
Yidong Wu
The evolution of insecticide resistance represents a global constraint to agricultural production. Because of the extreme genetic diversity found in insects and the large numbers of genes involved in insecticide detoxification, better tools are needed to quickly identify and validate the involvement of putative resistance genes for improved monitoring, management, and countering of field-evolved insecticide resistance. The avermectins, emamectin benzoate (EB) and abamectin are relatively new pesticides with reduced environmental risk that target a wide number of insect pests, including the beet armyworm,Spodoptera exigua, an important global pest of many crops. Unfortunately, field resistance to avermectins recently evolved in the beet armyworm, threatening the sustainable use of this class of insecticides. Here, we report a high-quality chromosome-level assembly of the beet armyworm genome and use bulked segregant analysis (BSA) to identify the locus of avermectin resistance, which mapped on 15–16 Mbp of chromosome 17. Knockout of theCYP9A186gene that maps within this region by CRISPR/Cas9 gene editing fully restored EB susceptibility, implicating this gene in avermectin resistance. Heterologous expression andin vitrofunctional assays further confirm that a natural substitution (F116V) found in the substrate recognition site 1 (SRS1) of the CYP9A186 protein results in enhanced metabolism of EB and abamectin. Hence, the combined approach of coupling gene editing with BSA allows for the rapid identification of metabolic resistance genes responsible for insecticide resistance, which is critical for effective monitoring and adaptive management of insecticide resistance.