Traditional feature selection methods assume that all data instances and features are known before learning. However, it is not the case in many real-world applications that we are more likely faced with data streams or feature streams or both. Feature streams are defined as features that flow in one by one over time, whereas the number of training examples remains fixed. Existing streaming feature selection methods focus on removing irrelevant and redundant features and selecting the most relevant features, but they ignore the interaction between features. A feature might have little correlation with the target concept by itself, but, when it is combined with some other features, they can be strongly correlated with the target concept. In other words, the interactive features contribute to the target concept as an integer greater than the sum of individuals. Nevertheless, most of the existing streaming feature selection methods treat features individually, but it is necessary to consider the interaction between features. In this article, we focus on the problem of feature interaction in feature streams and propose a new streaming feature selection method that can select features to interact with each other, named Streaming Feature Selection considering Feature Interaction (SFS-FI). With the formal definition of feature interaction, we design a new metric named interaction gain that can measure the interaction degree between the new arriving feature and the selected feature subset. Besides, we analyzed and demonstrated the relationship between feature relevance and feature interaction. Extensive experiments conducted on 14 real-world microarray data sets indicate the efficiency of our new method.
4 May 2021 in IEEE Journal of Biomedical and Health Informatics
Automated and accurate segmentations of left atrium (LA) and atrial scars from late gadolinium-enhanced cardiac magnetic resonance (LGE CMR) images are in high demand for quantifying atrial scars. The previous quantification of atrial scars relies on a two-phase segmentation for LA and atrial scars due to their large volume difference (unbalanced atrial targets). In this paper, we propose an inter-cascade generative adversarial network, namely JAS-GAN, to segment the unbalanced atrial targets from LGE CMR images automatically and accurately in an end-to-end way. Firstly, JAS-GAN investigates an adaptive attention cascade to automatically correlate the segmentation tasks of the unbalanced atrial targets. The adaptive attention cascade mainly models the inclusion relationship of the two unbalanced atrial targets, where the estimated LA acts as the attention map to adaptively focus on the small atrial scars roughly. Then, an adversarial regularization is applied to the segmentation tasks of the unbalanced atrial targets for making a consistent optimization. It mainly forces the estimated joint distribution of LA and atrial scars to match the real ones. We evaluated the performance of our JAS-GAN on a 3D LGE CMR dataset with 192 scans. Compared with the state-of-the-art methods, our proposed approach yielded better segmentation performance (Average Dice Similarity Coefficient (DSC) values of 0.946 and 0.821 for LA and atrial scars, respectively), which indicated the effectiveness of our proposed approach for segmenting unbalanced atrial targets.
17 August 2020 in IEEE Transactions on Medical Imaging
Quantification of coronary artery stenosis on X-ray angiography (XRA) images is of great importance during the intraoperative treatment of coronary artery disease. It serves to quantify the coronary artery stenosis by estimating the clinical morphological indices, which are essential in clinical decision making. However, stenosis quantification is still a challenging task due to the overlapping, diversity and small-size region of the stenosis in the XRA images. While efforts have been devoted to stenosis quantification through low-level features, these methods have difficulty in learning the real mapping from these features to the stenosis indices. These methods are still cumbersome and unreliable for the intraoperative procedures due to their two-phase quantification, which depends on the results of segmentation or reconstruction of the coronary artery. In this work, we are proposing a hierarchical attentive multiview learning model (HEAL) to achieve a direct quantification of coronary artery stenosis, without the intermediate segmentation or reconstruction. We have designed a multi-view learning model to learn more complementary information of the stenosis from different views. For this purpose, an intra-view hierarchical attentive block is proposed to learn the discriminative information of stenosis. Additionally, a stenosis representation learning module is developed to extract the multi-scale features from the keyframe perspective for considering the clinical workflow. Finally, the morphological indices are directly estimated based on the multiview feature embedding. Extensive experiment studies on clinical multi-manufacturer dataset consisting of 228 subjects show the superiority of our HEAL against nine comparing methods, including direct quantification methods and multi-view learning methods. The experimental results demonstrate the better clinical agreement between the ground truth and the prediction, which endows our proposed method with a great potential for the efficient intraoperative treatment of coronary artery disease.
The estimation of multitype cardiac indices from cardiac magnetic resonance imaging (MRI) and computed tomography (CT) images attracts great attention because of its clinical potential for comprehensive function assessment. However, the most exiting model can only work in one imaging modality (MRI or CT) without transferable capability. In this article, we propose the multitask learning method with the reverse inferring for estimating multitype cardiac indices in MRI and CT. Different from the existing forward inferring methods, our method builds a reverse mapping network that maps the multitype cardiac indices to cardiac images. The task dependencies are then learned and shared to multitask learning networks using an adversarial training approach. Finally, we transfer the parameters learned from MRI to CT. A series of experiments were conducted in which we first optimized the performance of our framework via ten-fold cross-validation of over 2900 cardiac MRI images. Then, the fine-tuned network was run on an independent data set with 2360 cardiac CT images. The results of all the experiments conducted on the proposed adversarial reverse mapping show excellent performance in estimating multitype cardiac indices.
3D semi-supervised medical image segmentation is extremely essential in computer-aided diagnosis, which can reduce the time-consuming task of performing annotation. The challenges with current 3D semi-supervised segmentation algorithms includes the methods, limited attention to volume-wise context information, their inability to generate accurate pseudo labels and a failure to capture important details during data augmentation. This article proposes a dual uncertainty-guided mixing consistency network for accurate 3D semi-supervised segmentation, which can solve the above challenges. The proposed network consists of a Contrastive Training Module which improves the quality of augmented images by retaining the invariance of data augmentation between original data and their augmentations. The Dual Uncertainty Strategy calculates dual uncertainty between two different models to select a more confident area for subsequent segmentation. The Mixing Volume Consistency Module that guides the consistency between mixing before and after segmentation for final segmentation, uses dual uncertainty and can fully learn volume-wise context information. Results from evaluative experiments on brain tumor and left atrial segmentation shows that the proposed method outperforms state-of-the-art 3D semi-supervised methods as confirmed by quantitative and qualitative analysis on datasets. This effectively demonstrates that this study has the potential to become a medical tool for accurate segmentation. Code is available at: https://github.com/yang6277/DUMC .