Unprecedented technological advances in digitization and the steadily expanding open‐access digital repositories are yielding new opportunities to quickly and efficiently measure morphological traits without transportation and advanced/expensive microscope machinery. A prime example is the AntWeb.org database, which allows researchers from all over the world to study taxonomic, ecological, or evolutionary questions on the same ant specimens with ease. However, the reproducibility and reliability of morphometric data deduced from AntWeb compared to traditional microscope measurements has not yet been tested. Here, we compared 12 morphological traits of 46 Temnothorax ant specimens measured either directly by stereomicroscope on physical specimens or via the widely used open‐access software tpsDig utilizing AntWeb digital images. We employed a complex statistical framework to test several aspects of reproducibility and reliability between the methods. We estimated (i) the agreement between the measurement methods and (ii) the trait value dependence of the agreement, then (iii) compared the coefficients of variation produced by the different methods, and finally, (iv) tested for systematic bias between the methods in a mixed modeling‐based statistical framework. The stereomicroscope measurements were extremely precise. Our comparisons showed that agreement between the two methods was exceptionally high, without trait value dependence. Furthermore, the coefficients of variation did not differ between the methods. However, we found systematic bias in eight traits: apart from one trait where software measurements overestimated the microscopic measurements, the former underestimated the latter. Our results shed light on the fact that relying solely on the level of agreement between methods can be highly misleading. In our case, even though the software measurements predicted microscope measurements very well, replacing traditional microscope measurements with software measurements, and especially mixing data collected by the different methods, might result in erroneous conclusions. We provide guidance on the best way to utilize virtual specimens (2D z‐stacked images) as a source of morphometric data, emphasizing the method's limitations in certain fields and applications.
In intensively used landscapes biodiversity is often restricted to fragmented habitats. Exploring the biodiversity potential of habitat fragments is essential in order to reveal their complementary role in maintaining landscape-scale biodiversity. We investigated the conservation potential of dry grassland fragments in the Great Hungarian Plain, i.e. patch-like habitats on ancient burial mounds and linear-shaped habitats in verges, and compared them to continuous grasslands. We focused on plant taxonomic diversity, species richness of specialists, generalists and weeds, and the phylogenetic diversity conserved in the habitats. Verges meshing the landscape are characterised by a small core area and high level of disturbance. Their species pool was more similar to grasslands than mounds due to the lack of dispersal limitations. They held high species richness of weeds and generalists and only few specialists. Verges preserved only a small proportion of the evolutionary history of specialists, which were evenly distributed between the clades. Isolated mounds are characterised by a small area, a high level of environmental heterogeneity, and a low level of disturbance. Steep slopes of species accumulation curves suggest that high environmental heterogeneity likely contributes to the high species richness of specialists on mounds. Mounds preserved the same amount of phylogenetic diversity represented by the branch-lengths as grasslands. Abundance-weighted evolutionary distinctiveness of specialists was more clustered in these habitats due to the special habitat conditions. For the protection of specialists in transformed landscapes it is essential to focus efforts on preserving both patch-like and linear grassland fragments containing additional components of biodiversity.
3 March 2022 in Journal of Environmental Management
As we enter the United Nations Decade on Ecosystem Restoration, there is an increasing need for finding nature-based solutions for the restoration of grasslands across the globe. Besides seed sowing, alternative restoration methods that build on locally available propagule sources, such as hay transfer, should also be considered and given high priority. The transfer of hay from a donor site to the restoration site serves a double aim by introducing target species and suppressing weeds. We tested the applicability of hay transfer in restoring species-rich grassland in a former cropland in Hungary, over six years of post-restoration monitoring from 2015 to 2020. We sampled the plant species composition of the three donor sites (target state of restoration) and the area surrounding the restoration site. We found that six year after restoration, a species-rich grassland developed with 42 successfully established specialist species that had a cover of 45%. Most specialist species became established from the hay from the second to the sixth year, but the surrounding areas also provided additional propagule sources. Among the eight analysed functional traits, seed mass of the transferred species was the best predictor of the establishment of specialists, and we found that small-seeded species had an establishment advantage in the first years after restoration. Our results suggest that hay transfer can be a suitable nature-based solution for local grassland restoration projects and its potential should be utilized especially in regions where suitable donor sites are present in sufficient quantity and quality.
Psoriasis (Pso) is a chronic inflammatory skin disease that poses both physical and psychological challenges. Dysbiosis of the skin microbiome has been implicated in Pso, yet a comprehensive multi-omics analysis of host-microbe interactions is still lacking. To bridge this gap, we conducted an exploratory study by adopting the integrated approach that combines whole metagenomic shotgun sequencing with skin transcriptomics. This was a cross-sectional study, adult patients with plaque-type Psoriasis (Pso) and healthy volunteers were included. Skin microbiota samples and biopsies were collected from both lesional and non-lesional skin areas on the lower back. Weighted Gene Correlation Network Analysis (WGCNA) was employed for co-expression network analysis, and cell deconvolution was conducted to estimate cell fractions. Taxonomic and functional features of the microbiome were identified using whole metagenomic shotgun sequencing. Association between host genes and microbes was analyzed using Spearman correlation. Host anti-viral responses and interferon-related networks were identified and correlated with the severity of psoriasis. The skin microbiome showed a greater prevalence of Corynebacterium simulans in the PASI severe-moderate groups, which correlated with interferon-induced host genes. Two distinct psoriatic clusters with varying disease severities were identified. Variations in the expression of cell apoptosis-associated antimicrobial peptides (AMPs) and microbial aerobic respiration I pathway may partly account for these differences in disease severity. Our multi-omics analysis revealed for the first time anti-viral responses and the presence of C. simulans associated with psoriasis severity. It also identified two psoriatic subtypes with distinct AMP and metabolic pathway expression. Our study provides new insights into understanding the host-microbe interaction in psoriasis and lays the groundwork for developing subtype-specific strategies for managing this chronic skin disease. The research has received funding from the FP7 (MAARS-Grant 261366) and the Innovative Medicines Initiative 2 Joint Undertaking (JU) under grant agreement No 821511 (BIOMAP). The JU receives support from the European Union's Horizon 2020 research and innovation programme and EFPIA. This publication reflects only the author's view and the JU is not responsible for any use that may be made of the information it contains. GAM was supported by a scholarship provided by CAPES-PRINT, financed by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - CAPES (Brazilian Government Agency). The authors thank all patients who participated in our study.
Cohort splitting has been described as differences in time until maturation and / or life span in the same age group. Cohort splitting generally occurs when individuals of a cohort originating from the same season experience different environmental conditions, such as in early and late progenies. However, in the wolf spider Pardosa agrestis (Westring, 1861) spiderlings of the same clutch may follow either slow or rapid development, leading to a second adult peak within a year comprised of the rapidly developing individuals. We hypothesized that weather conditions experienced by the spiderlings in their early ontogeny may contribute to a life history decision between slow and rapid development. To test this hypothesis, we have used long term collection data and non-parametric habitat modeling. We found that highest abundance of the rapidly developing phenotype was correlated with a narrow range of early weather conditions. This result is in accordance with our early choice hypothesis, although the...