Teemu Ihalainen

Dr. Teemu Ihalainen


Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 July 2016 in PLOS Pathogens
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Journal Article
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IAInes Anderl
Ines Anderl
LVLaura Vesala
Laura Vesala
TITeemu Ihalainen
Teemu Ihalainen
LVLeena-Maija Vanha-Aho
Leena-Maija Vanha-Aho
IAIstván Andó
István Andó
DHDan Hultmark
Dan Hultmark
Cellular immune responses require the generation and recruitment of diverse blood cell types that recognize and kill pathogens. In Drosophila melanogaster larvae, immune-inducible lamellocytes participate in recognizing and killing parasitoid wasp eggs. However, the sequence of events required for lamellocyte generation remains controversial. To study the cellular immune system, we developed a flow cytometry approach using in vivo reporters for lamellocytes as well as for plasmatocytes, the main hemocyte type in healthy larvae. We found that two different blood cell lineages, the plasmatocyte and lamellocyte lineages, contribute to the generation of lamellocytes in a demand-adapted hematopoietic process. Plasmatocytes transdifferentiate into lamellocyte-like cells in situ directly on the wasp egg. In parallel, a novel population of infection-induced cells, which we named lamelloblasts, appears in the circulation. Lamelloblasts proliferate vigorously and develop into the major class of circulating lamellocytes. Our data indicate that lamellocyte differentiation upon wasp parasitism is a plastic and dynamic process. Flow cytometry with in vivo hemocyte reporters can be used to study this phenomenon in detail. Hematopoiesis is regulated by a conserved set of signaling pathways in flies and men. While the implication of multiplex flow cytometry has led to the discovery of a plethora of new human blood cell types, it has not routinely been used to study fly hematopoiesis. We present here the application of flow cytometry with in vivo blood cell reporter constructs to study infection-induced hematopoiesis in blood samples from single fly larvae. We put forward a new perspective on Drosophila hematopoiesis, based on our discovery of new blood cell types. We show a switch from steady-state to demand-adapted hematopoiesis in fly larvae, which corresponds well to the described demand-adapted hematopoiesis after infection and inflammation in humans. Our results provide new insights into the dynamics of infection-induced hematopoiesis in fly larvae and increase the versatility of the fly as a model system to study the cellular innate immune system.

19 August 2011 in PLOS ONE
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Journal Article
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TKThomas Kühn
Thomas Kühn
TITeemu Ihalainen
Teemu Ihalainen
JHJari Hyväluoma
Jari Hyväluoma
NDNicolas Dross
Nicolas Dross
SWSami F. Willman
Sami F. Willman
JTJussi Timonen
Jussi Timonen
We introduce a new method for mesoscopic modeling of protein diffusion in an entire cell. This method is based on the construction of a three-dimensional digital model cell from confocal microscopy data. The model cell is segmented into the cytoplasm, nucleus, plasma membrane, and nuclear envelope, in which environment protein motion is modeled by fully numerical mesoscopic methods. Finer cellular structures that cannot be resolved with the imaging technique, which significantly affect protein motion, are accounted for in this method by assigning an effective, position-dependent porosity to the cell. This porosity can also be determined by confocal microscopy using the equilibrium distribution of a non-binding fluorescent protein. Distinction can now be made within this method between diffusion in the liquid phase of the cell (cytosol/nucleosol) and the cytoplasm/nucleoplasm. Here we applied the method to analyze fluorescence recovery after photobleach (FRAP) experiments in which the diffusion coefficient of a freely-diffusing model protein was determined for two different cell lines, and to explain the clear difference typically observed between conventional FRAP results and those of fluorescence correlation spectroscopy (FCS). A large difference was found in the FRAP experiments between diffusion in the cytoplasm/nucleoplasm and in the cytosol/nucleosol, for all of which the diffusion coefficients were determined. The cytosol results were found to be in very good agreement with those by FCS.

24 August 2015 in Nature Materials
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Journal Article
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TITeemu Ihalainen
Teemu Ihalainen
LALina Aires
Lina Aires
FHFlorian A. Herzog
Florian A. Herzog
RSRuth Schwartlander
Ruth Schwartlander
JMJens Moeller
Jens Moeller
VVViola Vogel
Viola Vogel
Nuclear lamins play central roles at the intersection between cytoplasmic signalling and nuclear events. Here, we show that at least two N- and C-terminal lamin epitopes are not accessible at the basal side of the nuclear envelope under environmental conditions known to upregulate cell contractility. The conformational epitope on the Ig-domain of A-type lamins is more buried in the basal than apical nuclear envelope of human mesenchymal stem cells undergoing osteogenesis (but not adipogenesis), and in fibroblasts adhering to rigid (but not soft) polyacrylamide hydrogels. This structural polarization of the lamina is promoted by compressive forces, emerges during cell spreading, and requires lamin A/C multimerization, intact nucleoskeleton–cytoskeleton linkages (LINC), and apical-actin stress-fibre assembly. Notably, the identified Ig-epitope overlaps with emerin, DNA and histone binding sites, and comprises various laminopathy mutation sites. Our findings should help decipher how the physical properties of cellular microenvironments regulate nuclear events.

2 January 2007 in BMC Biotechnology
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Journal Article
Open access
JRJohanna Rinne
Johanna Rinne
BABrian Albarran
Brian Albarran
JJJuulia Jylhävä
Juulia Jylhävä
TITeemu Ihalainen
Teemu Ihalainen
PKPasi Kankaanpää
Pasi Kankaanpää
MVMaija Vihinen-Ranta
Maija Vihinen-Ranta
Background: The cell-penetrating peptide derived from the Human immunodeficiency virus-1 transactivator protein Tat possesses the capacity to promote the effective uptake of various cargo molecules across the plasma membrane in vitro and in vivo. The objective of this study was to characterize the uptake and delivery mechanisms of a novel streptavidin fusion construct, TAT47–57-streptavidin (TAT-SA, 60 kD). SA represents a potentially useful TAT-fusion partner due to its ability to perform as a versatile intracellular delivery vector for a wide array of biotinylated molecules or cargoes. Results: By confocal and immunoelectron microscopy the majority of internalized TAT-SA was shown to accumulate in perinuclear vesicles in both cancer and non-cancer cell lines. The uptake studies in living cells with various fluorescent endocytic markers and inhibiting agents suggested that TAT-SA is internalized into cells efficiently, using both clathrin-mediated endocytosis and lipid-raft-mediated macropinocytosis. When endosomal release of TAT-SA was enhanced through the incorporation of a biotinylated, pH-responsive polymer poly(propylacrylic acid) (PPAA), nuclear localization of TAT-SA and TAT-SA bound to biotin was markedly improved. Additionally, no significant cytotoxicity was detected in the TAT-SA constructs. Conclusion: This study demonstrates that TAT-SA-PPAA is a potential non-viral vector to be utilized in protein therapeutics to deliver biotinylated molecules both into cytoplasm and nucleus of human cells.

1 January 2019 in Materials Science and Engineering: C
Verified
Journal Article
Open access
JKJennika Karvinen
Jennika Karvinen
TITeemu Ihalainen
Teemu Ihalainen
MCMaria Teresa Calejo
Maria Teresa Calejo
IJIlari Jönkkäri
Ilari Jönkkäri
MKMinna Kellomäki
Minna Kellomäki
Microstructure plays an essential role in the control of hydrogel properties. It is also an important factor when cells or drugs are encapsulated inside the hydrogel. In this work, the microstructures of hydrazone crosslinked hyaluronan-, alginate- and gellan gum-based hydrogels were evaluated thoroughly for the first time by using rheology- and diffusion (fluorescence recovery after photobleaching, FRAP)-based methods. The effect of gel parameters on the viscoelastic and diffusion properties of hydrogels, and further on their structural parameters (mesh size, average molecular weight of the polymer chain between neighboring crosslinks, crosslinking density) are shown. Results further show that diffusivity decreased when larger dextran sizes were used, which were equivalent to the mesh sizes of hydrogels (15 nm to 47 nm) evaluated by the rheological method. This mesh size range allows the transportation of smaller molecules, but also peptides and most of the proteins. A correlation between the storage modulus and the structural parameters was also shown. Overall, hydrazone crosslinking offers an easy way to produce polysaccharide-based hydrogels with variable microstructures by altering the gel parameters.

28 June 2006 in Nano Letters
Verified
Journal Article
Closed access
STSampo Tuukkanen
Sampo Tuukkanen
JTJussi Toppari
Jussi Toppari
AKAnton Kuzyk
Anton Kuzyk
LHLasse Hirviniemi
Lasse Hirviniemi
Vesa HytönenVesa Hytönen
Vesa Hytönen
PTPäivi Törmä
Päivi Törmä