Heikki Saari

Dr. Heikki Saari

orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 October 2013 in Remote Sensing
Verified
Journal Article
Open access
PDF file
EHEija Honkavaara
Eija Honkavaara
HSHeikki Saari
Heikki Saari
JKJere Kaivosoja
Jere Kaivosoja
IPIlkka Pölönen
Ilkka Pölönen
THTeemu Hakala
Teemu Hakala
LPLiisa Pesonen
Liisa Pesonen
Imaging using lightweight, unmanned airborne vehicles (UAVs) is one of the most rapidly developing fields in remote sensing technology. The new, tunable, Fabry-Perot interferometer-based (FPI) spectral camera, which weighs less than 700 g, makes it possible to collect spectrometric image blocks with stereoscopic overlaps using light-weight UAV platforms. This new technology is highly relevant, because it opens up new possibilities for measuring and monitoring the environment, which is becoming increasingly important for many environmental challenges. Our objectives were to investigate the processing and use of this new type of image data in precision agriculture. We developed the entire processing chain from raw images up to georeferenced reflectance images, digital surface models and biomass estimates. The processing integrates photogrammetric and quantitative remote sensing approaches. We carried out an empirical assessment using FPI spectral imagery collected at an agricultural wheat test site in the summer of 2012. Poor weather conditions during the campaign complicated the data processing, but this is one of the challenges that are faced in operational applications. The results indicated that the camera performed consistently and that the data processing was consistent, as well. During the agricultural experiments, promising results were obtained for biomass estimation when the spectral data was used and when an appropriate radiometric correction was applied to the data. Our results showed that the new FPI technology has a great potential in precision agriculture and indicated many possible future research topics.

23 February 2017 in Remote Sensing
Verified
Journal Article
Open access
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ONOlli Nevalainen
Olli Nevalainen
EHEija Honkavaara
Eija Honkavaara
STSakari Tuominen
Sakari Tuominen
NKNiko Koivumäki
Niko Koivumäki
THTeemu Hakala
Teemu Hakala
Antonio TommaselliAntonio Tommaselli
Antonio Tommaselli
Small unmanned aerial vehicle (UAV) based remote sensing is a rapidly evolving technology. Novel sensors and methods are entering the market, offering completely new possibilities to carry out remote sensing tasks. Three-dimensional (3D) hyperspectral remote sensing is a novel and powerful technology that has recently become available to small UAVs. This study investigated the performance of UAV-based photogrammetry and hyperspectral imaging in individual tree detection and tree species classification in boreal forests. Eleven test sites with 4151 reference trees representing various tree species and developmental stages were collected in June 2014 using a UAV remote sensing system equipped with a frame format hyperspectral camera and an RGB camera in highly variable weather conditions. Dense point clouds were measured photogrammetrically by automatic image matching using high resolution RGB images with a 5 cm point interval. Spectral features were obtained from the hyperspectral image blocks, the large radiometric variation of which was compensated for by using a novel approach based on radiometric block adjustment with the support of in-flight irradiance observations. Spectral and 3D point cloud features were used in the classification experiment with various classifiers. The best results were obtained with Random Forest and Multilayer Perceptron (MLP) which both gave 95% overall accuracies and an F-score of 0.93. Accuracy of individual tree identification from the photogrammetric point clouds varied between 40% and 95%, depending on the characteristics of the area. Challenges in reference measurements might also have reduced these numbers. Results were promising, indicating that hyperspectral 3D remote sensing was operational from a UAV platform even in very difficult conditions. These novel methods are expected to provide a powerful tool for automating various environmental close-range remote sensing tasks in the very near future.

5 May 2018 in Remote Sensing
Verified
Journal Article
Open access
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STSakari Tuominen
Sakari Tuominen
RNRoope Näsi
Roope Näsi
EHEija Honkavaara
Eija Honkavaara
ABAndras Balazs
Andras Balazs
THTeemu Hakala
Teemu Hakala
HOHarri Ojanen
Harri Ojanen
Recognition of tree species and geospatial information on tree species composition is essential for forest management. In this study, tree species recognition was examined using hyperspectral imagery from visible to near-infrared (VNIR) and short-wave infrared (SWIR) camera sensors in combination with a 3D photogrammetric canopy surface model based on RGB camera stereo-imagery. An arboretum with a diverse selection of 26 tree species from 14 genera was used as a test area. Aerial hyperspectral imagery and high spatial resolution photogrammetric color imagery were acquired from the test area using unmanned aerial vehicle (UAV) borne sensors. Hyperspectral imagery was processed to calibrated reflectance mosaics and was tested along with the mosaics based on original image digital number values (DN). Two alternative classifiers, a k nearest neighbor method (k-nn), combined with a genetic algorithm and a random forest method, were tested for predicting the tree species and genus, as well as for selecting an optimal set of remote sensing features for this task. The combination of VNIR, SWIR, and 3D features performed better than any of the data sets individually. Furthermore, the calibrated reflectance values performed better compared to uncorrected DN values. These trends were similar with both tested classifiers. Of the classifiers, the k-nn combined with the genetic algorithm provided consistently better results than the random forest algorithm. The best result was thus achieved using calibrated reflectance features from VNIR and SWIR imagery together with 3D point cloud features; the proportion of correctly-classified trees was 0.823 for tree species and 0.869 for tree genus.

1 January 2015 in Silva Fennica
Verified
Journal Article
Open access
STSakari Tuominen
Sakari Tuominen
ABAndras Balazs
Andras Balazs
HSHeikki Saari
Heikki Saari
IPIlkka Pölönen
Ilkka Pölönen
JSJanne Sarkeala
Janne Sarkeala
RVRisto Viitala
Risto Viitala

30 March 2022 in Journal of Clinical Medicine
Verified
Journal Article
Open access
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VLVivian Lindholm
Vivian Lindholm
ARAnna-Maria Raita-Hakola
Anna-Maria Raita-Hakola
LALeevi Annala
Leevi Annala
MSMari Salmivuori
Mari Salmivuori
LJLeila Jeskanen
Leila Jeskanen
ARAnnamari Ranki
Annamari Ranki
Several optical imaging techniques have been developed to ease the burden of skin cancer disease on our health care system. Hyperspectral images can be used to identify biological tissues by their diffuse reflected spectra. In this second part of a three-phase pilot study, we used a novel hand-held SICSURFIS Spectral Imager with an adaptable field of view and target-wise selectable wavelength channels to provide detailed spectral and spatial data for lesions on complex surfaces. The hyperspectral images (33 wavelengths, 477–891 nm) provided photometric data through individually controlled illumination modules, enabling convolutional networks to utilise spectral, spatial, and skin-surface models for the analyses. In total, 42 lesions were studied: 7 melanomas, 13 pigmented and 7 intradermal nevi, 10 basal cell carcinomas, and 5 squamous cell carcinomas. All lesions were excised for histological analyses. A pixel-wise analysis provided map-like images and classified pigmented lesions with a sensitivity of 87% and a specificity of 93%, and 79% and 91%, respectively, for non-pigmented lesions. A majority voting analysis, which provided the most probable lesion diagnosis, diagnosed 41 of 42 lesions correctly. This pilot study indicates that our non-invasive hyperspectral imaging system, which involves shape and depth data analysed by convolutional neural networks, is feasible for differentiating between malignant and benign pigmented and non-pigmented skin tumours, even on complex skin surfaces.

1 January 2017 in Silva Fennica
Verified
Journal Article
Open access
STSakari Tuominen
Sakari Tuominen
ABAndras Balazs
Andras Balazs
EHEija Honkavaara
Eija Honkavaara
IPIlkka Pölönen
Ilkka Pölönen
HSHeikki Saari
Heikki Saari
NKNiko Koivumäki
Niko Koivumäki