The risk-characterization of chemicals requires the determination of repeated-dose toxicity (RDT). This depends on two main outcomes: the no-observed-adverse-effect level (NOAEL) and the lowest-observed-adverse-effect level (LOAEL). These endpoints are fundamental requirements in several regulatory frameworks, such as the Registration, Evaluation, Authorization and Restriction of Chemicals (REACH) and the European Regulation of 1223/2009 on cosmetics. The RDT results for the safety evaluation of chemicals are undeniably important; however, the in vivo tests are time-consuming and very expensive. The in silico models can provide useful input to investigate sub-chronic RDT. Considering the complexity of these endpoints, involving variable experimental designs, this non-testing approach is challenging and attractive. Here, we built eight in silico models for the NOAEL and LOAEL predictions, focusing on systemic and organ-specific toxicity, looking into the effects on the liver, kidney and brain. Starting with the NOAEL and LOAEL data for oral sub-chronic toxicity in rats, retrieved from public databases, we developed and validated eight quantitative structure-activity relationship (QSAR) models based on the optimal descriptors calculated by the Monte Carlo method, using the CORAL software. The results obtained with these models represent a good achievement, to exploit them in a safety assessment, considering the importance of organ-related toxicity.
A new, freely available software for cosmetic products has been designed considering the regulatory framework for cosmetics. This software allows an overall toxicological evaluation of cosmetic ingredients without the need of additional testing and, depending on the product type, it applies defined exposure scenarios to derive risk for consumers. It takes regulatory thresholds into account and uses either experimental values, if available, or predictions. Based on experimental or predicted no observed adverse effect level (NOAEL), the software can define a point of departure (POD), which is useful to calculate the margin of safety (MoS) of the query chemicals. The software also provides other toxicological properties, such as mutagenicity, skin sensitization and the threshold of toxicological concern (TTC) to provide an overall evaluation of the potential chemical hazard. Predictions are calculated using in silico models implemented within the VEGA software. The full list of ingredients of a cosmetic product can be processed at the same time, at the effective concentration in the product given by the user. SpheraCosmolife is designed as a support tool for the safety assessors of cosmetic products and can be used to prioritize the cosmetic ingredients or formulations according to their potential risk for the consumers. The major novelty of the tool is that it wraps a series of models (some of them new) into a single user-friendly software system.
Antioxidants are widely studied compounds with significant applications in the nutraceutical and dietary industries. To enable the rapid screening of large libraries of substances for antioxidant activity and to provide a useful tool for the initial evaluation of substances of interest with unknown activity, we developed Quantitative Structure–Activity Relationship (QSAR) models to predict the antioxidant potential of chemical substances. We started from a dataset of 1911 antioxidant substances, retrieved from the AODB database by selecting the DPPH (1,1-diphenyl-2-picrylhydrazyl) radical scavenging activity assay and the experimental value of the half-maximal inhibitory concentration. Different machine learning algorithms were applied to build regression models, and the goodness-of-fit of each model was assessed using the statistical parameters of R squared (R2), the Root-Mean-Squared Error, and the Mean Absolute Error. The Extra Trees model outperformed the other models in both internal and external validations, achieving the highest R2 of 0.77 and the lowest RMSE on the test set. Gradient Boosting and eXtreme Gradient Boosting also achieved promising results with R2 values of 0.76 and 0.75, respectively. Given these results, we developed an integrated method that not only outperformed the individual models, achieving an R2 of 0.78 on the external test set, but also provided valuable insights into the range of predicted values.
12 November 2020 in SAR and QSAR in Environmental Research
Ideal correlation is one variable model based on so-called optimal descriptors calculated with simplified molecular input-line entry systems (SMILES). The optimal descriptor is calculated according to the index of ideality of correlation, a new criterion of predictive potential of quantitative structure–property/activity relationships (QSPRs/QSARs). The aim of the present study was the building and estimation of models for inhalation toxicity as No Observed Adverse Effect Concentration (NOAEC) based on the OECD guidelines 413. Three random distributions into the training set and validation set were examined. In practice, a structured training set that contains active training set, passive training set and calibration set is used as the training set. The statistical characteristics of the best model for negative logarithm of NOAEC (pNOAEC) are for training set n = 108, average r2 = 0.52 + 0.62 + 0.76/3 = 0.63 and for validation set n = 35, r2 = 0.73.