Precipitation is considered a key factor influencing the fluorescent dissolved organic matter (FDOM) of urban rivers. However, the multiple effects of precipitation on FDOM in urban rivers and the long-term impacts of precipitation on the spatial patterns of FDOM are seldom known. Spatiotemporal variations of FDOM at 36 sites from the urban rivers of Jinan City during dry and wet seasons were investigated in this study. Four components were identified using an excitation–emission matrix and parallel factor analysis. Overall, the total fluorescence intensities in dry and wet seasons ranged from 6.59 to 35.7 quinine sulfate units (QSU) and 3.42 to 69.3 QSU, respectively. Significant variations were found for different components that C2 and C3 declined but C4 increased in the wet season (p < 0.05). The temporal variations for different components could be explained by the different combined effects of precipitation dilution and flushing. Three different reference FDOM sources, including background water, spring water, and wastewater treatment plant (WWTP) outlets, were illustrated using principal coordinate analysis (PCoA). The places of FDOM in most sites were more closed to the PCoA location of WWTP outlets in the dry season while central shifted in the wet season. The changes of FDOM sources in the wet season could be explained by the mixed effect of precipitation. In conclusion, this study provided new insights into the multiple impacts of precipitation on FDOM in urban river systems, and also data support for precise pollution discharge and water resource management.

The imbalance of water supply and demand forces many cities to transfer water across basins, which changes the original “rainfall–runoff” relationship in urban basins. Long-term hydrological simulation of urban basins requires a tool that comprehensively considers the relationship of “rainfall–runoff” and the background of inter-basin water transfer. This paper combines the rainfall–runoff model, the GR3 model, with the background of inter-basin water transfer to simulate the hydrological process of Huangtaiqiao basin (321 km²) in Jinan city, Shandong Province, China for 18 consecutive years with a 1 h time step. Twenty-one flood simulation results of different scales over 18 years were selected for statistical analysis. By comparing the simulation results of the GR3 model and the measured process, the results were verified by multiple evaluation indicators (the Nash–Sutcliffe efficiency coefficient, water relative error, the relative error of flood peak flow, and difference of peak arrival time) at different time scales. It was found that the simulation results of the GR3 model after inter-basin water transfer were considered to be in good agreement with the measured data. This study proves the long-term impact of inter-basin water transfer on rainfall–runoff processes in an urban basin, and the GR3-ibwt model can better simulate the hydrological processes of urban basins, providing a new perspective and method.