Patrick Frank

Dr. Patrick Frank

SLAC National Accelerator Laboratory, Menlo Park, California, USA
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Research Focus & Metrics

Academic Career Length

38Years (1989-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 July 2016 in The Journal of Chemical Physics
Verified
Journal Article
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MAMatthew Antalek
Matthew Antalek
EPElisabetta Pace
Elisabetta Pace
BHBritt Hedman
Britt Hedman
KHKeith O. Hodgson
Keith O. Hodgson
GCGiovanni Chillemi
Giovanni Chillemi
PFPatrick Frank
Patrick Frank
Three-dimensional models for the aqueous solvation structures of chloride, bromide, and iodide are reported. K-edge extended X-ray absorption fine structure (EXAFS) and Minuit X-ray absorption near edge (MXAN) analyses found well-defined single shell solvation spheres for bromide and iodide. However, dissolved chloride proved structurally distinct, with two solvation shells needed to explain its strikingly different X-ray absorption near edge structure (XANES) spectrum. Final solvation models were as follows: iodide, 8 water molecules at 3.60 ± 0.13 Å and bromide, 8 water molecules at 3.40 ± 0.14 Å, while chloride solvation included 7 water molecules at 3.15 ± 0.10 Å, and a second shell of 7 water molecules at 4.14 ± 0.30 Å. Each of the three derived solvation shells is approximately uniformly disposed about the halides, with no global asymmetry. Time-dependent density functional theory calculations simulating the chloride XANES spectra following from alternative solvation spheres revealed surprising sensitivity of the electronic state to 6-, 7-, or 8-coordination, implying a strongly bounded phase space for the correct structure during an MXAN fit. MXAN analysis further showed that the asymmetric solvation predicted from molecular dynamics simulations using halide polarization can play no significant part in bulk solvation. Classical molecular dynamics used to explore chloride solvation found a 7-water solvation shell at 3.12 (−0.04/+0.3) Å, supporting the experimental result. These experiments provide the first fully three-dimensional structures presenting to atomic resolution the aqueous solvation spheres of the larger halide ions.

26 February 2015 in The Journal of Chemical Physics
Verified
Journal Article
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PFPatrick Frank
Patrick Frank
MBMaurizio Benfatto
Maurizio Benfatto
MQMunzarin Qayyam
Munzarin Qayyam
BHBritt Hedman
Britt Hedman
KHKeith O. Hodgson
Keith O. Hodgson
High-resolution EXAFS (k = 18 Å−1) and MXAN XAS analyses show that axially elongated square pyramidal [Cu(H2O)5]2+ dominates the structure of Cu(II) in aqueous solution, rather than 6-coordinate JT-octahedral [Cu(H2O)6]2+. Freezing produced a shoulder at 8989.6 eV on the rising XAS edge and an altered EXAFS spectrum, while 1s → 3d transitions remained invariant in energy position and intensity. Core square pyramidal [Cu(H2O)5]2+ also dominates frozen solution. Solvation shells were found at ∼3.6 Å (EXAFS) or ∼3.8 Å (MXAN) in both liquid and frozen phases. However, MXAN analysis revealed that about half the time in liquid solution, [Cu(H2O)5]2+ associates with an axially non-bonding 2.9 Å water molecule. This distant water apparently organizes the solvation shell. When the 2.9 Å water molecule is absent, the second shell is undetectable to MXAN. The two structural arrangements may represent energetic minima of fluxional dissolved aqueous [Cu(H2O)5]2+. The 2.9 Å trans-axial water resolves an apparent conflict of the [Cu(H2O)5]2+ core model with a dissociational exchange mechanism. In frozen solution, [Cu(H2O)5]2+ is associated with either a 3.0 Å axial non-bonded water molecule or an axial ClO4− at 3.2 Å. Both structures are again of approximately equal presence. When the axial ClO4− is present, Cu(II) is ∼0.5 Å above the mean O4 plane. This study establishes [Cu(H2O)5]2+ as the dominant core structure for Cu(II) in water solution, and is the first to both empirically resolve multiple extended solution structures for fluxional [Cu(H2O)5]2+ and to provide direct evidence for second shell dynamics.

8 February 2012 in Inorganic Chemistry
Verified
Journal Article
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PFPatrick Frank
Patrick Frank
MBMaurizio Benfatto
Maurizio Benfatto
BHBritt Hedman
Britt Hedman
KHKeith O. Hodgson
Keith O. Hodgson

23 May 2018 in The Journal of Chemical Physics
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Journal Article
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PFPatrick Frank
Patrick Frank
MBMaurizio Benfatto
Maurizio Benfatto
MQMunzarin Qayyum
Munzarin Qayyum
High resolution (k = 18 Å−1 or k = 17 Å−1) copper K-edge EXAFS and MXAN (Minuit X-ray Absorption Near Edge) analyses have been used to investigate the structure of dissolved [Cu(aq)]2+ in 1,3-propanediol (1,3-P) or 1,5-pentanediol (1,5-P) aqueous frozen glasses. EXAFS analysis invariably found a single axially asymmetric 6-coordinate (CN6) site, with 4×Oeq = 1.97 Å, Oax1 = 2.22 Å, and Oax2 = 2.34 Å, plus a second-shell of 4×Owater = 3.6 Å. However, MXAN analysis revealed that [Cu(aq)]2+ occupies both square pyramidal (CN5) and axially asymmetric CN6 structures. The square pyramid included 4×H2O = 1.95 Å and 1×H2O = 2.23 Å. The CN6 sites included either a capped, near perfect, square pyramid with 5×H2O = 1.94 ± 0.04 Å and H2Oax = 2.22 Å (in 1,3-P) or a split axial configuration with 4×H2O = 1.94, H2Oax1 = 2.14 Å, and H2Oax2 = 2.28 Å (in 1,5-P). The CN6 sites also included an 8-H2O second-shell near 3.7 Å, which was undetectable about the strictly pyramidal sites. Equatorial angles averaging 94° ± 5° indicated significant departures from tetragonal planarity. MXAN assessment of the solution structure of [Cu(aq)]2+ in 1,5-P prior to freezing revealed the same structures as previously found in aqueous 1M HClO4, which have become axially compressed in the frozen glasses. [Cu(aq)]2+ in liquid and frozen solutions is dominated by a 5-coordinate square pyramid, but with split axial CN6 appearing in the frozen glasses. Among these phases, the Cu–O axial distances vary across 1 Å, and the equatorial angles depart significantly from the square plane. Although all these structures remove the dx2-y2 , dz2 degeneracy, no structure can be described as a Jahn-Teller (JT) axially elongated octahedron. The JT-octahedral description for dissolved [Cu(aq)]2+ should thus be abandoned in favor of square pyramidal [Cu(H2O)5]2+. The revised ligand environments have bearing on questions of the Cu(i)/Cu(ii) self-exchange rate and on the mechanism for ligand exchange with bulk water. The plasticity of dissolved Cu(ii) complex ions falsifies the foundational assumption of the rack-induced bonding theory of blue copper proteins and obviates any need for a thermodynamically implausible protein constraint.


1 February 2014 in Journal of Inorganic Biochemistry
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Journal Article
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PFPatrick Frank
Patrick Frank
BHBritt Hedman
Britt Hedman
KHKeith O. Hodgson
Keith O. Hodgson