The segmentation of skin lesions in dermoscopic images is a fundamental step in automated computer-aided diagnosis of melanoma. Conventional segmentation methods, however, have difficulties when the lesion borders are indistinct and when contrast between the lesion and the surrounding skin is low. They also perform poorly when there is a heterogeneous background or a lesion that touches the image boundaries; this then results in underand oversegmentation of the skin lesion. We suggest that saliency detection using the reconstruction errors derived from a sparse representation model coupled with a novel background detection can more accurately discriminate the lesion from surrounding regions. We further propose a Bayesian framework that better delineates the shape and boundaries of the lesion. We also evaluated our approach on two public datasets comprising 1100 dermoscopic images and compared it to other conventional and state-of-the-art unsupervised (i.e., no training required) lesion segmentation methods, as well as the state-of-the-art unsupervised saliency detection methods. Our results show that our approach is more accurate and robust in segmenting lesions compared to other methods. We also discuss the general extension of our framework as a saliency optimization algorithm for lesion segmentation.
Over the last decade, supervised deep learning on manually annotated big data has been progressing significantly on computer vision tasks. But, the application of deep learning in medical image analysis is limited by the scarcity of high-quality annotated medical imaging data. An emerging solution is self-supervised learning (SSL), among which contrastive SSL is the most successful approach to rivalling or outperforming supervised learning. This review investigates several state-of-the-art contrastive SSL algorithms originally on natural images as well as their adaptations for medical images, and concludes by discussing recent advances, current limitations, and future directions in applying contrastive SSL in the medical domain.
3 February 2020 in IEEE Transactions on Medical Imaging
The accuracy and robustness of image classification with supervised deep learning are dependent on the availability of large-scale labelled training data. In medical imaging, these large labelled datasets are sparse, mainly related to the complexity in manual annotation. Deep convolutional neural networks (CNNs), with transferable knowledge, have been employed as a solution to limited annotated data through: 1) fine-tuning generic knowledge with a relatively smaller amount of labelled medical imaging data, and 2) learning image representation that is invariant to different domains. These approaches, however, are still reliant on labelled medical image data. Our aim is to use a new hierarchical unsupervised feature extractor to reduce reliance on annotated training data. Our unsupervised approach uses a multi-layer zero-bias convolutional auto-encoder that constrains the transformation of generic features from a pre-trained CNN (for natural images) to non-redundant and locally relevant features for the medical image data. We also propose a context-based feature augmentation scheme to improve the discriminative power of the feature representation. We evaluated our approach on 3 public medical image datasets and compared it to other state-of-the-art supervised CNNs. Our unsupervised approach achieved better accuracy when compared to other conventional unsupervised methods and baseline fine-tuned CNNs.