The development of methods that can accurately detect physiological stress in forest trees caused by biotic or abiotic factors is vital for ensuring productive forest systems that can meet the demands of the Earth’s population. The emergence of new sensors and platforms presents opportunities to augment traditional practices by combining remotely-sensed data products to provide enhanced information on forest condition. We tested the sensitivity of multispectral imagery collected from time-series unmanned aerial vehicle (UAV) and satellite imagery to detect herbicide-induced stress in a carefully controlled experiment carried out in a mature Pinus radiata D. Don plantation. The results revealed that both data sources were sensitive to physiological stress in the study trees. The UAV data were more sensitive to changes at a finer spatial resolution and could detect stress down to the level of individual trees. The satellite data tested could only detect physiological stress in clusters of four or more trees. Resampling the UAV imagery to the same spatial resolution as the satellite imagery revealed that the differences in sensitivity were not solely the result of spatial resolution. Instead, vegetation indices suited to the sensor characteristics of each platform were required to optimise the detection of physiological stress from each data source. Our results define both the spatial detection threshold and the optimum vegetation indices required to implement monitoring of this forest type. A comparison between time-series datasets of different spectral indices showed that the two sensors are compatible and can be used to deliver an enhanced method for monitoring physiological stress in forest trees at various scales. We found that the higher resolution UAV imagery was more sensitive to fine-scale instances of herbicide induced physiological stress than the RapidEye imagery. Although less sensitive to smaller phenomena the satellite imagery was found to be very useful for observing trends in physiological stress over larger areas.

Exotic conifers can provide significant ecosystem services, but in some environments, they have become invasive and threaten indigenous ecosystems. In New Zealand, this phenomenon is of considerable concern as the area occupied by invasive exotic trees is large and increasing rapidly. Remote sensing methods offer a potential means of identifying and monitoring land infested by these trees, enabling managers to efficiently allocate resources for their control. In this study, we sought to develop methods for remote detection of exotic invasive trees, namely Pinus sylvestris and P. ponderosa. Critically, the study aimed to detect these species prior to the onset of maturity and coning as this is important for preventing further spread. In the study environment in New Zealand’s South Island, these species reach maturity and begin bearing cones at a young age. As such, detection of these smaller individuals requires specialist methods and very high-resolution remote sensing data. We examined the efficacy of classifiers developed using two machine learning algorithms with multispectral and laser scanning data collected from two platforms—manned aircraft and unmanned aerial vehicles (UAV). The study focused on a localized conifer invasion originating from a multi-species pine shelter belt in a grassland environment. This environment provided a useful means of defining the detection thresholds of the methods and technologies employed. An extensive field dataset including over 17,000 trees (height range = 1 cm to 476 cm) was used as an independent validation dataset for the detection methods developed. We found that data from both platforms and using both logistic regression and random forests for classification provided highly accurate (kappa $<0.996$ ) detection of invasive conifers. Our analysis showed that the data from both UAV and manned aircraft was useful for detecting trees down to 1 m in height and therefore shorter than 99.3% of the coning individuals in the study dataset. We also explored the relative contribution of both multispectral and airborne laser scanning (ALS) data in the detection of invasive trees through fitting classification models with different combinations of predictors and found that the most useful models included data from both sensors. However, the combination of ALS and multispectral data did not significantly improve classification accuracy. We believe that this was due to the simplistic vegetation and terrain structure in the study site that resulted in uncomplicated separability of invasive conifers from other vegetation. This study provides valuable new knowledge of the efficacy of detecting invasive conifers prior to the onset of coning using high-resolution data from UAV and manned aircraft. This will be an important tool in managing the spread of these important invasive plants.

The measurement of forestry trials is a costly and time-consuming process. Over the past few years, unmanned aerial vehicles (UAVs) have provided some significant developments that could improve cost and time efficiencies. However, little research has examined the accuracies of these technologies for measuring young trees. This study compared the data captured by a UAV laser scanning system (ULS), and UAV structure from motion photogrammetry (SfM), with traditional field-measured heights in a series of forestry trials in the central North Island of New Zealand. Data were captured from UAVs, and then processed into point clouds, from which heights were derived and compared to field measurements. The results show that predictions from both ULS and SfM were very strongly correlated to tree heights (R² = 0.99, RMSE = 5.91%, and R² = 0.94, RMSE = 18.5%, respectively) but that the height underprediction was markedly lower for ULS than SfM (Mean Bias Error = 0.05 vs. 0.38 m). Integration of a ULS DTM to the SfM made a minor improvement in precision (R² = 0.95, RMSE = 16.5%). Through plotting error against tree height, we identified a minimum threshold of 1 m, under which the accuracy of height measurements using ULS and SfM significantly declines. Our results show that SfM and ULS data collected from UAV remote sensing can be used to accurately measure height in young forestry trials. It is hoped that this study will give foresters and tree breeders the confidence to start to operationalise this technology for monitoring trials.

Phenotyping has been a reality for aiding the selection of optimal crops for specific environments for decades in various horticultural industries. However, until recently, phenotyping was less accessible to tree breeders due to the size of the crop, the length of the rotation and the difficulty in acquiring detailed measurements. With the advent of affordable and non-destructive technologies, such as mobile laser scanners (MLS), phenotyping of mature forests is now becoming practical. Despite the potential of MLS technology, few studies included detailed assessments of its accuracy in mature plantations. In this study, we assessed a novel, high-density MLS operated below canopy for its ability to derive phenotypic measurements from mature Pinus radiata. MLS data were co-registered with above-canopy UAV laser scanner (ULS) data and imported to a pipeline that segments individual trees from the point cloud before extracting tree-level metrics. The metrics studied include tree height, diameter at breast height (DBH), stem volume and whorl characteristics. MLS-derived tree metrics were compared to field measurements and metrics derived from ULS alone. Our pipeline was able to segment individual trees with a success rate of 90.3%. We also observed strong agreement between field measurements and MLS-derived DBH (R² = 0.99, RMSE = 5.4%) and stem volume (R² = 0.99, RMSE = 10.16%). Additionally, we proposed a new variable height method for deriving DBH to avoid swelling, with an overall accuracy of 52% for identifying the correct method for where to take the diameter measurement. A key finding of this study was that MLS data acquired from below the canopy was able to derive canopy heights with a level of accuracy comparable to a high-end ULS scanner (R² = 0.94, RMSE = 3.02%), negating the need for capturing above-canopy data to obtain accurate canopy height models. Overall, the findings of this study demonstrate that even in mature forests, MLS technology holds strong potential for advancing forest phenotyping and tree measurement.

Purpose of Review: Since the late 1990s, researchers have been increasingly utilising digital methodologies to assess the branch structure of trees. The emergence of commercial terrestrial laser scanners during this period catalysed an entirely new domain focused on point cloud-based research. Over the years, this field has transformed from a complex computational discipline into a practical tool that effectively supports research endeavours. Through the combined use of non-destructive remote sensing techniques and advanced analytical methods, branch characterisation can now be carried out at an unprecedented level. Recent Findings: While terrestrial laser scanning has traditionally been the dominant methodology for this research domain, the increased use of mobile laser scanners and unmanned aerial vehicles indicates a transition towards more mobile platforms. Quantitative structural modelling (QSM) has been pivotal in advancing this field, enhancing branch characterisation capabilities across diverse fields. The past five years have seen increased uptake of 2D and 3D deep learning techniques as alternatives. Summary: This article presents a comprehensive synthesis of approximately 25 years of research in the field of digital branch characterisation, reviewing the data capture technologies and analytical methods, along with the forest types and tree species to which these technologies have been applied. It explores the current trends in this dynamic field of research, research gaps and some of the key challenges that remain within this field. In this review, we placed particular emphasis on the potential resolution of the significant challenge associated with occlusion through the utilisation of mobile technologies, such as mobile laser scanners and unmanned aerial vehicles. We highlight the need for a more cohesive method for assessing point cloud quality and derived structural model accuracy, and benchmarking data sets that can be used to test new and existing algorithms.