Yonghong Shi

Dr. Yonghong Shi

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 August 2018 in BioMedical Engineering OnLine
Verified
Journal Article
Open access
PDF file
CQChunli Qin
Chunli Qin
DYDemin Yao
Demin Yao
YSYonghong Shi
Yonghong Shi
ZSZhijian Song
Zhijian Song
As the most common examination tool in medical practice, chest radiography has important clinical value in the diagnosis of disease. Thus, the automatic detection of chest disease based on chest radiography has become one of the hot topics in medical imaging research. Based on the clinical applications, the study conducts a comprehensive survey on computer-aided detection (CAD) systems, and especially focuses on the artificial intelligence technology applied in chest radiography. The paper presents several common chest X-ray datasets and briefly introduces general image preprocessing procedures, such as contrast enhancement and segmentation, and bone suppression techniques that are applied to chest radiography. Then, the CAD system in the detection of specific disease (pulmonary nodules, tuberculosis, and interstitial lung diseases) and multiple diseases is described, focusing on the basic principles of the algorithm, the data used in the study, the evaluation measures, and the results. Finally, the paper summarizes the CAD system in chest radiography based on artificial intelligence and discusses the existing problems and trends.

8 June 2024 in BioMedical Engineering OnLine
Verified
Journal Article
Open access
PDF file
XLXiaoyu Liu
Xiaoyu Liu
LQLinhao Qu
Linhao Qu
ZXZiyue Xie
Ziyue Xie
JZJiayue Zhao
Jiayue Zhao
YSYonghong Shi
Yonghong Shi
ZSZhijian Song
Zhijian Song
Accurate segmentation of multiple organs in the head, neck, chest, and abdomen from medical images is an essential step in computer-aided diagnosis, surgical navigation, and radiation therapy. In the past few years, with a data-driven feature extraction approach and end-to-end training, automatic deep learning-based multi-organ segmentation methods have far outperformed traditional methods and become a new research topic. This review systematically summarizes the latest research in this field. We searched Google Scholar for papers published from January 1, 2016 to December 31, 2023, using keywords “multi-organ segmentation” and “deep learning”, resulting in 327 papers. We followed the PRISMA guidelines for paper selection, and 195 studies were deemed to be within the scope of this review. We summarized the two main aspects involved in multi-organ segmentation: datasets and methods. Regarding datasets, we provided an overview of existing public datasets and conducted an in-depth analysis. Concerning methods, we categorized existing approaches into three major classes: fully supervised, weakly supervised and semi-supervised, based on whether they require complete label information. We summarized the achievements of these methods in terms of segmentation accuracy. In the discussion and conclusion section, we outlined and summarized the current trends in multi-organ segmentation.

29 June 2022 in Brain Sciences
Verified
Journal Article
Open access
PDF file
YMYucong Meng
Yucong Meng
HWHaoran Wang
Haoran Wang
CWChuanfu Wu
Chuanfu Wu
XLXiaoyu Liu
Xiaoyu Liu
LQLinhao Qu
Linhao Qu
YSYonghong Shi
Yonghong Shi
Intravenous thrombolysis is the most commonly used drug therapy for patients with acute ischemic stroke, which is often accompanied by complications of intracerebral hemorrhage transformation (HT). This study proposed to build a reliable model for pretreatment prediction of HT. Specifically, 5400 radiomics features were extracted from 20 regions of interest (ROIs) of multiparametric MRI images of 71 patients. Furthermore, a minimal set of all-relevant features were selected by LASSO from all ROIs and used to build a radiomics model through the random forest (RF). To explore the significance of normal ROIs, we built a model only based on abnormal ROIs. In addition, a model combining clinical factors and radiomics features was further built. Finally, the models were tested on an independent validation cohort. The radiomics model with 14 All-ROIs features achieved pretreatment prediction of HT (AUC = 0.871, accuracy = 0.848), which significantly outperformed the model with only 14 Abnormal-ROIs features (AUC = 0.831, accuracy = 0.818). Besides, combining clinical factors with radiomics features further benefited the prediction performance (AUC = 0.911, accuracy = 0.894). So, we think that the combined model can greatly assist doctors in diagnosis. Furthermore, we find that even if there were no lesions in the normal ROIs, they also provide characteristic information for the prediction of HT.

19 December 2022 in European Journal of Nuclear Medicine and Molecular Imaging
Verified
Journal Article
Closed access
PDF file
CQChi Qi
Chi Qi
SWShuo Wang
Shuo Wang
HYHaojun Yu
Haojun Yu
YZYiqiu Zhang
Yiqiu Zhang
PHPengcheng Hu
Pengcheng Hu
HSHongcheng Shi
Hongcheng Shi

25 August 2023 in Laboratory Investigation
Verified
Journal Article
Closed access
QGQinhao Guo
Qinhao Guo
LQLinhao Qu
Linhao Qu
JZJun Zhu
Jun Zhu
HLHaiming Li
Haiming Li
YWYong Wu
Yong Wu
XWXiaohua Wu
Xiaohua Wu

11 January 2021 in IEEE Transactions on Neural Networks and Learning Systems
Verified
Journal Article
Closed access
CQChunli Qin
Chunli Qin
JZJi Zhou
Ji Zhou
DYDemin Yao
Demin Yao
HZHan Zhuang
Han Zhuang
HWHui Wang
Hui Wang
ZSZhijian Song
Zhijian Song
Accurate identification and localization of the vertebrae in CT scans is a critical and standard pre-processing step for clinical spinal diagnosis and treatment. Existing methods are mainly based on the integration of multiple neural networks, and most of them use heatmaps to locate the vertebrae’s centroid. However, the process of obtaining vertebrae’s centroid coordinates using heatmaps is non-differentiable, so it is impossible to train the network to label the vertebrae directly. Therefore, for end-to-end differential training of vertebrae coordinates on CT scans, a robust and accurate automatic vertebral labeling algorithm is proposed in this study. First, a novel end-to-end integral regression localization and multi-label classification network is developed, which can capture multi-scale features and also utilize the residual module and skip connection to fuse the multi-level features. Second, to solve the problem that the process of finding coordinates is non-differentiable and the spatial structure of location being destroyed, an integral regression module is used in the localization network. It combines the advantages of heatmaps representation and direct regression coordinates to achieve end-to-end training and can be compatible with any key point detection methods of medical images based on heatmaps. Finally, multi-label classification of vertebrae is carried out to improve the identification rate, which uses bidirectional long short-term memory (Bi-LSTM) online to enhance the learning of long contextual information of vertebrae. The proposed method is evaluated on a challenging data set, and the results are significantly better than state-of-the-art methods (identification rate is 91.1% and the mean localization error is 2.2 mm). The method is evaluated on a new CT data set, and the results show that our method has good generalization.