Fish in the Volga-Kama River System (the largest river system in Europe) are important as a crucial food source for local populations; fish have the highest trophic level among hydrobionts. The purpose of this research is to describe the diversity of non-indigenous and native fish in the Volga and Kama Rivers, in the European part of Russia. This dataset encompasses data from June 2001 to September 2021 and comprises 1888 records (36,376 individual observations) for littoral and pelagic habitats from 143 sampling sites, representing 52 species from 42 genera in 22 families. The dataset has a Darwin Core standard format and has been fully released in the Global Biodiversity Information Facility (GBIF) under CC-BY 4.0 International license. The data are validated with several international databases such as FishBase, Eschmeyer’s Catalog of Fishes, the Barcode of Life Data System, and the SAS.Planet geoinformations system. Newly established populations have been found for several species belonging to the following Actinopteri families: Alosidae, Anguillidae, Cichlidae, Ehiravidae, Gobiidae, Odontobutidae, Syngnathidae, and Xenocyprididae. Therefore, this dataset can be used in the particular taxon species distribution analysis, which are especially important for non-indigenous species.