Climate change poses a serious threat to global agricultural activity and food production. Plant genome editing technologies have been widely used to develop crop varieties with superior qualities or can tolerate adverse environmental conditions. Unlike conventional breeding techniques (e.g., selective breeding and mutation breeding), modern genome editing tools offer more targeted and specific alterations of the plant genome and could significantly speed up the progress of developing crops with desired traits, such as higher yield and/or stronger resilience to the changing environment. In this review, we discuss the current development and future applications of genome editing technologies in mitigating the impacts of biotic and abiotic stresses on agriculture. We focus specifically on the CRISPR/Cas system, which has been the center of attention in the last few years as a revolutionary genome-editing tool in various species. We also conducted a bibliographic analysis on CRISPR-related papers published from 2012 to 2021 (10 years) to identify trends and potential in the CRISPR/Cas-related plant research. In addition, this review article outlines the current shortcomings and challenges of employing genome editing technologies in agriculture with notes on future prospective. We believe combining conventional and more innovative technologies in agriculture would be the key to optimizing crop improvement beyond the limitations of traditional agricultural practices.

Flooding caused or exacerbated by climate change has threatened plant growth and food production worldwide. The lack of knowledge on how crops respond and adapt to flooding stress imposes a major barrier to enhancing their productivity. Hence, understanding the flooding-responsive mechanisms of crops is indispensable for developing new flooding-tolerant varieties. Here, we examined the banana (Musa acuminata cv. Berangan) responses to soil waterlogging for 1, 3, 5, 7, 14, and 24 days. After waterlogging stress, banana root samples were analyzed for their molecular and biochemical changes. We found that waterlogging treatment induced the formation of adventitious roots and aerenchyma with conspicuous gas spaces. In addition, the antioxidant activities, hydrogen peroxide, and malondialdehyde contents of the waterlogged bananas increased in response to waterlogging stress. To assess the initial response of bananas toward waterlogging stress, we analyzed the transcriptome changes of banana roots. A total of 3508 unigenes were differentially expressed under 1-day waterlogging conditions. These unigenes comprise abiotic stress-related transcription factors, such as ethylene response factors, basic helix-loop-helix, myeloblastosis, plant signal transduction, and carbohydrate metabolisms. The findings of the study provide insight into the complex molecular events of bananas in response to waterlogging stress, which could later help develop waterlogging resilient crops for the future climate.

Climate change poses a serious threat to global agricultural activity and food production. To address this issue, plant genome editing technologies have been developed to provide an alternative solution for crop improvement. Unlike conventional breeding techniques (e.g., selective breeding and mutation breeding), modern genome editing tools offer more targeted and specific alterations of the plant genome to produce crops with desired traits, such as higher yield and/or stronger resilience to the changing environment. In this review, we discuss the current development and future applications of genome editing technologies in mitigating the impacts of biotic and abiotic stresses on agriculture. We focus specifically on the CRISPR/Cas system, which has been the center of attention in the last few years as a revolutionary genome-editing tool in various species. We also conducted a bibliographic analysis on CRISPR-related papers published from 2012 to 2021 (10 years) to identify trends and possible gaps in the CRISPR/Cas-related plant research. In addition, this review article outlines the current shortcomings and challenges of employing genome editing technologies in agriculture with notes on future prospective. We believe combining conventional and more innovative technologies in agriculture would be the key to optimizing crop improvement beyond the limitations of traditional agricultural practices.

The demethylation status of pectin, a major plant cell wall polysaccharide, is regulated by pectin methylesterases (PMEs) and their endogenous inhibitors (PMEIs). While PME-mediated removal of methyl groups increases pectin susceptibility to enzymatic degradation and facilitates wall remodeling, this process is suppressed by PMEIs to strengthen the wall, preventing pathogen invasion. How biotrophic pathogens overcome this inhibitory defense remains unclear. Here, we demonstrate how N-glycosylation serves as a post-translational mechanism that preshapes a conserved smut effector, directing its adaptation toward a host-specific PMEI to facilitate colonization. We identify the Ustilago maydis N-glycosylated effector Nge1, which interacts with 2 host inhibitors, PMEI45 and PMEI46, to suppress their inhibitory function. This release of PME activity leads to highly demethylated pectin in the host cell wall that is prone to degradation, likely driving the cell wall loosening favored by pathogens. Crucially, we show that N-glycosylation of Nge1 is essential for its interaction with PMEI45, whereas the interaction with PMEI46 is glycosylation-independent. Engineering N-glycosylation sites into a naturally nonglycosylated Nge1 ortholog restored its ability to neutralize host PMEIs and functionally complement the U. maydis Δnge1 mutant. Our findings reveal that smut fungi utilize post-translational glycan modifications to fine-tune effector specificity, allowing them to overcome host-adapted PMEIs and manipulate plant cell wall dynamics in an ongoing plant-fungal interplay.