Flooding caused or exacerbated by climate change has threatened plant growth and food production worldwide. The lack of knowledge on how crops respond and adapt to flooding stress imposes a major barrier to enhancing their productivity. Hence, understanding the flooding-responsive mechanisms of crops is indispensable for developing new flooding-tolerant varieties. Here, we examined the banana (Musa acuminata cv. Berangan) responses to soil waterlogging for 1, 3, 5, 7, 14, and 24 days. After waterlogging stress, banana root samples were analyzed for their molecular and biochemical changes. We found that waterlogging treatment induced the formation of adventitious roots and aerenchyma with conspicuous gas spaces. In addition, the antioxidant activities, hydrogen peroxide, and malondialdehyde contents of the waterlogged bananas increased in response to waterlogging stress. To assess the initial response of bananas toward waterlogging stress, we analyzed the transcriptome changes of banana roots. A total of 3508 unigenes were differentially expressed under 1-day waterlogging conditions. These unigenes comprise abiotic stress-related transcription factors, such as ethylene response factors, basic helix-loop-helix, myeloblastosis, plant signal transduction, and carbohydrate metabolisms. The findings of the study provide insight into the complex molecular events of bananas in response to waterlogging stress, which could later help develop waterlogging resilient crops for the future climate.

Vacuolar processing enzyme (VPE) is a cysteine protease responsible for vacuolar proteins’ maturation and regulation of programmed cell death (PCD). Four isoforms of Arabidopsis thaliana VPEs were identified previously, but only the functions of βVPE, γVPE, and δVPE were determined. The specific function of a gene is linked to the cis-acting elements in the promoter region. A promoter analysis found repetitive drought-related cis-elements in αVPE, which highlight its potential involvement in drought regulation in A. thaliana. The further co-expression network portraying genes interacting with αVPE substantiated its drought-regulation-related function. Expression of αVPE was upregulated after drought treatment in A. thaliana. To confirm the role of αVPE, a loss of function study revealed that αVPE knockout mutants remained green compared with WT after drought treatment. The mutants had reduced proline activity, decreased sucrose content, and lower MDA content, but increased photosynthetic pigments, indicating that αVPE negatively regulates drought tolerance in A. thaliana. Taken together, our findings serve as important evidence of the involvement of αVPE in modulating drought tolerance in A. thaliana.

Fusarium wilt, caused by Fusarium oxysporum f. sp. cubense (Foc), is one of the most threatening fungal diseases affecting banana plantations across the globe. It was first discovered in Australia in 1874 and has now spread to numerous different regions in the world hinting at the persistency of the pathogen. Various management strategies have been devised aiming mainly on improving the plant’s tolerance or suppressing the infection. Fungicide is commonly used to control the disease spread, but it does not provide total protection to the plants besides displaying selective effectiveness on certain Foc strains. Alternatively, farmers apply crop rotation, rice hull burning, biological soil disinfestation, and compound-supplemented soil in their banana plantations. Studies have also shown that certain biocontrol agents manage to curb the disease threat. Selection of somaclonal variants and genetic manipulation via induced mutagenesis and transformation are also among the alternatives that have been implemented in producing Fusarium-tolerant and Fusarium-resistant banana plants. This chapter will describe Fusarium epidemics in banana, the effectiveness and challenges of different management approaches, as well as the future alternatives that can be adopted by taking advantages of the latest advances in omics technologies.

Fusarium wilt of bananas caused by Fusarium oxysporum f. sp. cubense Tropical Race 4 (Foc TR4) poses the most serious threat to banana production globally. The disease has been managed using chemical fungicides, yet the control levels are still unsatisfactory. This study investigated the antifungal activities of tea tree (Melaleuca alternifolia) essential oil (TTO) and hydrosol (TTH) against Foc TR4 and their bioactive components. The potential of TTO and TTH in inhibiting the growth of Foc TR4 was evaluated in vitro using agar well diffusion and spore germination assays. Compared to the chemical fungicide, TTO effectively suppressed the mycelial growth of Foc TR4 at 69%. Both the minimum inhibitory concentration (MIC) and minimum fungicidal concentration (MFC) of TTO and TTH were established at 0.2 µg/µL and 50% v/v, respectively, suggesting the fungicidal nature of the plant extracts. The disease control efficacies were also demonstrated by a (p ≤ 0.05) delayed Fusarium wilt symptom development in the susceptible banana plants with reduced LSI dan RDI scores from 70% to around 20–30%. A GC/MS analysis of TTO identified terpinen-4-ol, eucalyptol, and α-terpineol as the major components. In contrast, an LC/MS analysis of TTH identified different compounds, including dihydro-jasmonic acid and methyl ester. Our findings indicate the potential of tea tree extracts as natural alternatives to chemical fungicides to control Foc TR4.

Flooding caused or exacerbated by climate change has threatened plant growth and food production worldwide. The lack of knowledge on how crops respond and adapt to flooding stress imposes a major barrier to enhancing their productivity. Hence, understanding the flooding-responsive mechanisms of crops is indispensable for developing new flooding-tolerant varieties. Here, we examined the banana (Musa acuminata cv. Berangan) responses to soil waterlogging for 1, 3, 5, 7, 14, and 24 days. After waterlogging stress, banana root samples were analyzed for their molecular and biochemical changes. We found that waterlogging treatment induced the formation of adventitious roots and aerenchyma with conspicuous gas spaces. In addition, the antioxidant activities, hydrogen peroxide and malondialdehyde contents of the waterlogged bananas increased in response to waterlogging stress. To assess the initial response of bananas toward waterlogging stress, we analyzed the transcriptome changes of banana roots. A total of 3,508 unigenes were differentially expressed under 1-day waterlogging conditions. These unigenes comprise abiotic stress-related transcription factors, such as ethylene response factors, basic helix-loop-helix, myeloblastosis, plant signal transduction, and carbohydrate metabolisms. The findings of the study provide insight into the complex molecular events of bananas in response to waterlogging stress, which could later help develop waterlogging resilient crops for the future climate.

Trichanthera gigantea is a high-protein content tropical shrub with strong potential as a local source of livestock feed. However, the absence of proteomic information limits assessment of its protein stability and functional reliability. Robust proteome profiling of woody, metabolite-rich species requires optimized protein extraction strategies. Here, the study presents the first comparative evaluation of protein extraction workflows across T. gigantea organs (leaf, stem, and root) to establish a proteomics-compatible pipeline. Protein recovery using TCA/acetone, phenol-based, and a modified extraction method was quantitatively compared and further optimized by sonication. TCA/acetone extraction produced the highest protein yield in leaves (67.38 mg g⁻ ¹ ), while the modified method was most effective for roots (83.92 mg g⁻ ¹ ) and stems (65.58 mg g⁻ ¹ ) after normalization to tissue input. Despite its widespread use in plant proteomics, the phenol method yielded comparatively low total protein per gram of tissue in T. gigantea . As leaves represent the primary organ for feed applications, optimization focused on TCA/acetone-extracted leaf tissue. Short-duration sonication (10–20 min) significantly enhanced protein recovery, whereas prolonged sonication (≥ 30 min) reduced yields across all organs, consistent with protein degradation. The highest total protein yield was obtained after 10 min of sonication, reaching 77.14 mg/g of protein extracted from 1 g of leaf tissue. Using the optimized workflow, the first LC–MS/MS-based proteomics study of T. gigantea was performed, identifying 134 proteins predominantly associated with photosynthesis, redox homeostasis, and amino acid metabolism from its leaf tissue. These proteomic signatures reveal key metabolic nodes that may be targeted to enhance stress tolerance and protein productivity, establishing a foundational resource for future functional and applied proteomics in T. gigantea .