Artificial intelligence (AI) has revolutionized medical image analysis. Several neural network (NN) architectures were developed and applied across the last decade, becoming essential for automated diagnosis and clinical applications. AI based on NNs has become increasingly integrated into gastroenterology, offering new opportunities for automated lesion detection and workflow optimization. Small-bowel capsule endoscopy (SBCE) has benefited substantially from these advances, addressing long-standing challenges such as time-consuming video review and variability among readers. This systematic review and meta-analysis evaluated neural network-based models for lesion detection in SBCE, assessing pooled diagnostic accuracy and the impact of AI on reading time. A total of 44 primary studies were included: 36 validation studies for accuracy and 9 clinical studies for reading time. All NN architectures demonstrated high diagnostic performance, with a pooled accuracy of 95.3% (95% CI: 94.1–96.5%). More recent architectures, including transformer-based and capsule networks, outperformed classical convolutional neural networks (CNNs). AI assistance significantly reduced SBCE reading time, with a pooled mean reduction of 84% compared to standard review. These findings highlight the strong potential of AI to enhance SBCE efficiency and diagnostic reliability.