Hua Ye

Dr. Hua Ye


Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 March 2018 in Marine Biotechnology
Verified
Journal Article
Closed access
PDF file
HYHua Ye
Hua Ye
SXShijun Xiao
Shijun Xiao
XWXiaoqing Wang
Xiaoqing Wang
ZWZhiyong Wang
Zhiyong Wang
ZZZhengshi Zhang
Zhengshi Zhang
HLHui Luo
Hui Luo

1 January 2021 in Zoological Research
Verified
Journal Article
Open access
WHWen-Ping He
Wen-Ping He
JZJian Zhou
Jian Zhou
ZLZhe Li
Zhe Li
TJTing-Sen Jing
Ting-Sen Jing
CLChun-Hua Li
Chun-Hua Li
HYHua Ye
Hua Ye
The Chinese longsnout catfish ( Leiocassis longirostris Günther) is one of the most economically important freshwater fish in China. As wild populations have declined sharply in recent years, it is also a valuable model for research on sexual dimorphism, comparative biology, and conservation. However, the current lack of high-quality chromosome-level genome information for the species hinders the advancement of comparative genomic analysis and evolutionary studies. Therefore, we constructed the first high-quality chromosome-level reference genome for L. longirostris. The total genome was 703.19 Mb, with 389 contigs and contig N50 length of 4.29 Mb. Using high-throughput chromosome conformation capture (Hi-C) data, the genome sequences (685.53 Mb) were scaffolded into 26 chromosomes ranging from 17.36 to 43.97 Mb, resulting in a chromosomal anchoring rate for the genome of 97.44%. In total, 23 708 protein-coding genes were identified in the genome. Phylogenetic analysis indicated that L. longirostris and its closest related species P. fulvidraco diverged approximately 26.6 million years ago. This high-quality reference genome of L. longirostris should pave the way for future genomic comparisons and evolutionary research.

1 March 2022 in Comparative Biochemistry and Physiology Part D: Genomics and Proteomics
Verified
Journal Article
Closed access
ZLZhe Li
Zhe Li
XDXuesong Du
Xuesong Du
LWLuting Wen
Luting Wen
YLYu Li
Yu Li
JQJunqi Qin
Junqi Qin
HYHua Ye
Hua Ye

20 December 2023 in Comparative Biochemistry and Physiology Part D: Genomics and Proteomics
Verified
Journal Article
Closed access
YLYu Li
Yu Li
XZXinxi Zou
Xinxi Zou
HJHonghao Jin
Honghao Jin
BZBo Zhou
Bo Zhou
JZJian Zhou
Jian Zhou
HYHua Ye
Hua Ye

15 June 2020 in Scientific Reports
Verified
Journal Article
Open access
PDF file
HLHui Luo
Hui Luo
HLHaiping Liu
Haiping Liu
JZJie Zhang
Jie Zhang
BHBingjie Hu
Bingjie Hu
CZChaowei Zhou
Chaowei Zhou
HYHua Ye
Hua Ye
Gymnocypris namensis, the only commercial fish in Namtso Lake of Tibet in China, is rated as nearly threatened species in theRed List of China’s Vertebrates. As one of the highest-altitude schizothorax fish in China,G. namensishas strong adaptability to the plateau harsh environment. Although being an indigenous economic fish with high value in research, the biological characterization, genetic diversity, and plateau adaptability ofG. namensisare still unclear. Here, we used Pacific Biosciences single molecular real time long read sequencing technology to generate full-length transcripts ofG. namensis. Sequences clustering analysis and error correction with Illumina-produced short reads to obtain 319,044 polished isoforms. After removing redundant reads, 125,396 non-redundant isoforms were obtained. Among all transcripts, 103,286 were annotated to public databases. Natural selection has acted on 42 genes forG. namensis, which were enriched on the functions of mismatch repair and Glutathione metabolism. Total 89,736 open reading frames, 95,947 microsatellites, and 21,360 long non-coding RNAs were identified across all transcripts. This is the first study of transcriptome inG. namensisby using PacBio Iso-seq. The acquisition of full-length transcript isoforms might accelerate the transcriptome research ofG. namensisand provide basis for further research.

11 November 2022 in Frontiers in Marine Science
Verified
Journal Article
Open access
JTJing Tingsen
Jing Tingsen
LHLuo Hui
Luo Hui
HJHuang Junwa
Huang Junwa
LZLi Zhe
Li Zhe
LYLi Yu
Li Yu
HYHua Ye
Hua Ye
A 70-day experiment was conducted to investigate the effects of mulberry leaf extract (MLE) on growth, proximate compositions, antioxidant and plasma biochemical parameters, and indices of non-specific immunity of largemouth bass (Micropterus salmoides) fed a high-starch diet. Two hundred eighty largemouth bass (initial body weight, 68.00 ± 0.19 g) were randomly fed seven diets: basal-starch diet (BSD; 8.88% starch), high-starch diet (HSD; 11.42% starch), and HSD diets supplemented with 0.05%, 0.10%, 0.20%, 0.50%, and 1.00% MLE (MLE1, MLE2, MLE3, MLE4, and MLE5, respectively). The results indicated that HSD and MLE did not significantly affect the growth performance of largemouth bass during the experimental period compared with that of the BSD, but the supplementation with more than 0.20% (MLE3, MLE4, and MLE5) MLE significantly decreased the hepatosomatic index (HSI) values, and 1.00% (MLE5) MLE significantly decreased the viscerosomatic index (VSI) values. The whole-body moisture of fish fed an HSD decreased significantly, while the whole-body lipid content increased significantly in the HSD group compared with the BSD group. Compared with HSD, MLE supplementation significantly decreased the moisture and lipid contents in the whole body. Supplementation with more than 0.20% MLE (MLE3, MLE4, and MLE5) significantly decreased the moisture content in the muscle. Supplementation with 1.00% MLE significantly decreased the content of hepatic and muscle glycogen. The malondialdehyde (MDA) content of the HSD group was significantly increased compared to that of the BSD group, whereas more than 0.10% (MLE2, MLE3, MLE4, and MLE5) MLE significantly decreased the MDA content. Additionally, the total antioxidant capacity (T-AOC), catalase (CAT), and glutathione peroxidase (GSH-Px) activities of MLE5 were significantly higher than those of the HSD group. The complement-3 (C3) content and globulin (GLB) in the plasma of the HSD group were significantly lower than those of the BSD group. Plasma C3 levels in the MLE3, MLE4, and MLE5 groups were significantly higher than those in the HSD group. In addition, glucose (GLU) levels in the MLE3, MLE4, and MLE5 groups were significantly lower than those in the HSD group. Supplementation with 0.50% (MLE4) MLE significantly increased the lysozyme (LYZ) content and decreased the activities of alanine transaminase (ALT) and aspartate transaminase (AST). Supplementation with 1.00% MLE significantly increased complement-4 (C4) and GLB contents and alkaline phosphatase (ALP) activity. Overall, these findings suggest that MLE could improve antioxidant capacity, immune function, and glycolipid metabolism, thereby alleviating the negative effects of a high-starch diet in M. salmoides.