Vivek Vikram Singh

Dr. Vivek Vikram Singh

Czech University of Life Sciences Prague, Prague, Praha, Hlavní Město, Czech Republic
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Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 May 2024 in Reviews in Environmental Science and Bio/Technology
Verified
Journal Article
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Vivek Vikram SinghVivek Vikram Singh
Vivek Vikram Singh
ANAisha Naseer
Aisha Naseer
KMKanakachari Mogilicherla
Kanakachari Mogilicherla
ATAleksei Trubin
Aleksei Trubin
Khodabakhsh ZabihiKhodabakhsh Zabihi
Khodabakhsh Zabihi
NENadir Erbilgin
Nadir Erbilgin
Climate change has increased the susceptibility of forest ecosystems, resulting in escalated forest decline globally. As one of the largest forest biomasses in the Northern Hemisphere, the Eurasian boreal forests are subjected to frequent drought, windthrow, and high-temperature disturbances. Over the last century, bark beetle outbreaks have emerged as a major biotic threat to these forests, resulting in extensive tree mortality. Despite implementing various management strategies to mitigate the bark beetle populations and reduce tree mortality, none have been effective. Moreover, altered disturbance regimes due to changing climate have facilitated the success of bark beetle attacks with shorter and multivoltine life cycles, consequently inciting more frequent bark beetle-caused tree mortality. This review explores bark beetle population dynamics in the context of climate change, forest stand dynamics, and various forest management strategies. Additionally, it examines recent advancements like remote sensing and canine detection of infested trees and focuses on cutting-edge molecular approaches including RNAi-nanoparticle complexes, RNAi-symbiotic microbes, sterile insect technique, and CRISPR/Cas9-based methods. These diverse novel strategies have the potential to effectively address the challenges associated with managing bark beetles and improving forest health in response to the changing climate.

2 June 2023 in Frontiers in Forests and Global Change
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Journal Article
Open access
ATAleksei Trubin
Aleksei Trubin
GKGiorgi Kozhoridze
Giorgi Kozhoridze
KZKhodabakhsh Zabihi
Khodabakhsh Zabihi
RMRoman Modlinger
Roman Modlinger
Vivek Vikram SinghVivek Vikram Singh
Vivek Vikram Singh
RJRastislav Jakuš
Rastislav Jakuš
Climate change-related acute or long-term drought stress can weaken forest ecosystems and result in widespread bark beetle infestations. Eurasian spruce bark beetle (Ips typographus L.) infestations have been occurring in Norway spruce [Picea abies (L.) Karst.]-dominated forests in central Europe including the Czechia. These infestations appear regularly, especially in homogeneous spruce stands, and the impact varies with the climate-induced water stress conditions. The removal of infected trees before the beetles leave the bark is an important step in forest pest management. Early identification of susceptible trees to infestations is also very important but quite challenging since stressed tree-tops show no sign of discolouration in the visible spectrum. We investigated if individual spectral bandwidths or developed spectral vegetation indices (SVIs), can be used to differentiate non-attacked trees, assumed to be healthy, from trees susceptible to attacks in the later stages of a growing season. And, how the temporal-scale patterns of individual bands and developed SVIs of susceptible trees to attacks, driven by changes in spectral characteristics of trees, behave differently than those patterns observed for healthy trees. The multispectral imagery from the PlanetScope satellite coupled with field data were used to statistically test the competency of the individual band and/or developed SVIs to differentiate two designated classes of healthy and susceptible trees. We found significant differences between SVIs of the susceptible and healthy spruce forests using the Enhanced Vegetation Index (EVI) and Visible Atmospherically Resistant Index (VARI). The accuracy for both indices ranged from 0.7 to 0.78; the highest among all examined indices. The results indicated that the spectral differences between the healthy and susceptible trees were present at the beginning of the growing season before the attacks. The existing spectral differences, likely caused by water-stress stimuli such as droughts, may be a key to detecting forests susceptible to early infestations. Our introduced methodology can also be applied in future research, using new generations of the PlanetScope imagery, to assess forests susceptibility to bark beetle infestations early in the growing season.

1 November 2021 in Remote Sensing Applications: Society and Environment
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Journal Article
Closed access
Khodabakhsh ZabihiKhodabakhsh Zabihi
Khodabakhsh Zabihi
PSPeter Surovy
Peter Surovy
ATAleksei Trubin
Aleksei Trubin
Vivek Vikram SinghVivek Vikram Singh
Vivek Vikram Singh
RJRastislav Jakuš
Rastislav Jakuš

16 March 2024 in Forest Ecology and Management
Verified
Journal Article
Closed access
ATAleksei Trubin
Aleksei Trubin
GKGiorgi Kozhoridze
Giorgi Kozhoridze
KZKhodabakhsh Zabihi
Khodabakhsh Zabihi
RMRoman Modlinger
Roman Modlinger
Vivek Vikram SinghVivek Vikram Singh
Vivek Vikram Singh
RJRastislav Jakuš
Rastislav Jakuš

12 February 2024 in Forests
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Journal Article
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Rastislav JakušRastislav Jakuš
Rastislav Jakuš
ATAleksei Trubin
Aleksei Trubin
Vivek Vikram SinghVivek Vikram Singh
Vivek Vikram Singh
Khodabakhsh ZabihiKhodabakhsh Zabihi
Khodabakhsh Zabihi
AJAnna Jirošová
Anna Jirošová
FSFredrik Schlyter
Fredrik Schlyter
Tree-killing bark beetles require rapid management, such as anti-attractants, to stop the enlargement of attack hot-spots. We tested two newer anti-attractant blends, both without verbenone and one with the addition of trans-4-thujanol, in traps against standard pheromone baits for inhibition of catch. Both blends provided effective catch reduction (>95%). We also tested these anti-attractant blends in tree protection experiments for two years. We had experimental plots with a center of an anti-attractant protected tree zone, with no traditional control area, but we followed tree kills in 10 m wide concentric rings to 100 m. In 2020, we had 12 plots, and 9 plots in 2021. Monitoring by low-strength pheromone traps followed beetle flight averaging 300/trap during the shorter period, August 2020, and 5000/trap during the longer period, May to August 2021. The blends of anti-attractants were 100% effective in avoiding tree mortality in both treated trees and their surroundings. There were no bark beetle attacks on any treated trees, and there was zero tree mortality up to 19 m in 2020, and up to 30 m in 2021, thus full protection to circa 20 m. The density of killed trees then increased from close to zero, over 20 to 50 m, reaching a level of ca 30 (trees/ha) then declined. The spatial pattern of tree mortality on our experimental plots was highly heterogeneous and individual 10m-ring data points on tree kill density could not be statistically separated. In contrast, a non-linear regression model showed a continuous increase of attacks over the distance from the center to a peak ca 60m, followed by a decline. This model agrees partly with the only similar study in the literature, but importantly, it does not give a peak of kill density at distances between the first and second rings close to treatment zones. Such patterns of close-quarter kills have been observed as a “switching” of attack in this and other scolytid systems manipulated by anti-attractants, but not in the present study, likely due to the elimination of verbenone from our blends.

28 January 2024 in Plants
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Journal Article
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Vivek Vikram SinghVivek Vikram Singh
Vivek Vikram Singh
ANAisha Naseer
Aisha Naseer
SGSellamuthu Gothandapani
Sellamuthu Gothandapani
Rastislav JakušRastislav Jakuš
Rastislav Jakuš
Since the development of next-generation sequencing techniques and with the growing interest in transcriptomic studies, there is a demand for high-throughput RNA extraction techniques. General RNA extraction protocols are unreliable when it comes to the quality and quantity of isolated RNA obtained from different tissue types of different plant species. Despite Norway spruce (Picea abies) being one of the most significant and commercially valuable tree species in European forests, only limited genetic research is available. In this study, we developed a cetyltrimethylammonium bromide (CTAB) protocol by modifying the original method. We compared this CTAB protocol with other widely used methods for extracting RNA from different tissues (needle, phloem, and root) of Norway spruce, known for its richness in polyphenols, polysaccharides, and secondary metabolites. The modified CTAB method proves to be superior to the kit-based and TRIzol-based methods for extracting RNA from the metabolite-rich tissues of Norway spruce, resulting in high RNA quality and integrity values (RIN~7–9). The modified CTAB RNA extraction method is rapid, cost-effective, and relatively simple in yielding the desired RNA quality from Norway spruce tissues. It is optimal for RNA sequencing and other downstream molecular applications.