Pavel Zaripov

Mr. Pavel Zaripov

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Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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27 August 2022 in Cells
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TSTatiana Alexandrovna Seregina
Tatiana Alexandrovna Seregina
IPIrina Petrushanko
Irina Petrushanko
RSRustem Sayid Shakulov
Rustem Sayid Shakulov
PZPavel Zaripov
Pavel Zaripov
AMAlexander Makarov
Alexander Makarov
AMalexander mironov
alexander mironov
Impaired lipopolysaccharide biosynthesis in Gram-negative bacteria results in the “deep rough” phenotype, which is characterized by increased sensitivity of cells to various hydrophobic compounds, including antibiotics novobiocin, actinomycin D, erythromycin, etc. The present study showed that E. coli mutants carrying deletions of the ADP-heptose biosynthesis genes became hypersensitive to a wide range of antibacterial drugs: DNA gyrase inhibitors, protein biosynthesis inhibitors (aminoglycosides, tetracycline), RNA polymerase inhibitors (rifampicin), and β-lactams (carbenicillin). In addition, it was found that inactivation of the gmhA, hldE, rfaD, and waaC genes led to dramatic changes in the redox status of cells: a decrease in the pool of reducing NADPH and ATP equivalents, the concentration of intracellular cysteine, a change in thiol homeostasis, and a deficiency in the formation of hydrogen sulfide. In “deep rough” mutants, intensive formation of reactive oxygen species was observed, which, along with a lack of reducing agents, such as reactive sulfur species or NADPH, leads to oxidative stress and an increase in the number of dead cells in the population. Within the framework of modern ideas about the role of oxidative stress as a universal mechanism of the bactericidal action of antibiotics, inhibition of the enzymes of ADP-heptose biosynthesis is a promising direction for increasing the effectiveness of existing antibiotics and solving the problem of multidrug resistance.

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IKIuliia Dmitrievna Kuleshova
Iuliia Dmitrievna Kuleshova
PZPavel Zaripov
Pavel Zaripov
Yuri M. PoluektovYuri M. Poluektov
Yuri M. Poluektov
Anastasia A. AnashkinaAnastasia A. Anashkina
Anastasia A. Anashkina
DKDmitry Kaluzhny
Dmitry Kaluzhny
IPIrina Petrushanko
Irina Petrushanko
Hemoglobin is the main protein of red blood cells that provides oxygen transport to all cells of the human body. The ability of hemoglobin to bind the main low-molecular-weight thiol of the cell glutathione, both covalently and noncovalently, is not only an important part of the antioxidant protection of red blood cells, but also affects its affinity for oxygen in both cases. In this study, the properties of oxyhemoglobin in complex with reduced glutathione (GSH) and properties of glutathionylated hemoglobin bound to glutathione via an SS bond were characterized. For this purpose, the methods of circular dichroism, Raman spectroscopy, infrared spectroscopy, tryptophan fluorescence, differential scanning fluorimetry, and molecular modeling were used. It was found that the glutathionylation of oxyhemoglobin caused changes in the secondary structure of the protein, reducing the alpha helicity, but did not affect the heme environment, tryptophan fluorescence, and the thermostability of the protein. In the noncovalent complex of oxyhemoglobin with reduced glutathione, the secondary structure of hemoglobin remained almost unchanged; however, changes in the heme environment and the microenvironment of tryptophans, as well as a decrease in the protein’s thermal stability, were observed. Thus, the formation of a noncovalent complex of hemoglobin with glutathione makes a more significant effect on the tertiary and quaternary structure of hemoglobin than glutathionylation, which mainly affects the secondary structure of the protein. The obtained data are important for understanding the functioning of glutathionylated hemoglobin, which is a marker of oxidative stress, and hemoglobin in complex with GSH, which appears to deposit GSH and release it during deoxygenation to increase the antioxidant protection of cells.

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TSTatiana Alexandrovna Seregina
Tatiana Alexandrovna Seregina
IPIrina Petrushanko
Irina Petrushanko
PZPavel Zaripov
Pavel Zaripov
RSRustem Sayid Shakulov
Rustem Sayid Shakulov
SSSvetlana A. Sklyarova
Svetlana A. Sklyarova
AMalexander mironov
alexander mironov
Inactivation of enzymes responsible for biosynthesis of the cell wall component of ADP-glycero-manno-heptose causes the development of oxidative stress and sensitivity of bacteria to antibiotics of a hydrophobic nature. The metabolic precursor of ADP-heptose is sedoheptulose-7-phosphate (S7P), an intermediate of the non-oxidative branch of the pentose phosphate pathway (PPP), in which ribose-5-phosphate and NADPH are generated. Inactivation of the first stage of ADP-heptose synthesis (ΔgmhA) prevents the outflow of S7P from the PPP, and this mutant is characterized by a reduced biosynthesis of NADPH and of the Glu-Cys-Gly tripeptide, glutathione, molecules known to be involved in the resistance to oxidative stress. We found that the derepression of purine biosynthesis (∆purR) normalizes the metabolic equilibrium in PPP in ΔgmhA mutants, suppressing the negative effects of gmhA mutation likely via the over-expression of the glycine–serine pathway that is under the negative control of PurR and might be responsible for the enhanced synthesis of NADPH and glutathione. Consistently, the activity of the soxRS system, as well as the level of glutathionylation and oxidation of proteins, indicative of oxidative stress, were reduced in the double ΔgmhAΔpurR mutant compared to the ΔgmhA mutant.

1 November 2018 in Journal of Ichthyology
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DPD. S. Pavlov
D. S. Pavlov
EPEfim D. Pavlov
Efim D. Pavlov
VKV. V. Kostin
V. V. Kostin
PZPavel Zaripov
Pavel Zaripov
MRM. A. Ruchiev
M. A. Ruchiev
The effect of surfagon injection (synthetic analog of gonadotropic-releasing hormone) on the kind and time of rheoreaction change in juvenile brown trout Salmo truttais studied. In spite of...

1 January 2019 in Biology Bulletin
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DPD. S. Pavlov
D. S. Pavlov
EPEfim D. Pavlov
Efim D. Pavlov
EGE. V. Ganzha
E. V. Ganzha
PZPavel Zaripov
Pavel Zaripov
MRM. A. Ruchiev
M. A. Ruchiev
The short-term (up to ten days following injection) effect of a surfagon injection on rheoreaction in rainbow trout Parasalmo mykiss (= Oncorhynchus mykiss) at the age of three months was...