Yuan Liu

Dr. Yuan Liu

Department of Chemistry and Biochemistry, Florida International University, Miami, FL 33199, USA

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 April 2012 in Trends in Biochemical Sciences
Verified
Journal Article
Closed access
Yuan LiuYuan Liu
Yuan Liu
SWSamuel H. Wilson
Samuel H. Wilson

9 February 2017 in Genes
Verified
Journal Article
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QLQingying Luo
Qingying Luo
JBJill M. Beaver
Jill M. Beaver
Yuan LiuYuan Liu
Yuan Liu
ZZZunzhen Zhang
Zunzhen Zhang
Cellular stress‐induced temporal alterations—i.e., dynamics—are typically exemplified by the dynamics of p53 that serve as a master to determine cell fate. p53 dynamics were initially identified as the variations of p53 protein levels. However, a growing number of studies have shown that p53 dynamics are also manifested in variations in the activity, spatial location, and posttranslational modifications of p53 proteins, as well as the interplay among all p53 dynamical features. These are essential in determining a specific outcome of cell fate. In this review, we discuss the importance of the multifaceted features of p53 dynamics and their roles in the cell fate decision process, as well as their potential applications in p53‐based cancer therapy. The review provides new insights into p53 signaling pathways and their potentials in the development of new strategies in p53‐based cancer therapy.

22 August 2016 in Nature Communications
Verified
Journal Article
Open access
YLYanhao Lai
Yanhao Lai
HBHelen Budworth
Helen Budworth
JBJill M. Beaver
Jill M. Beaver
NCNelson L. S. Chan
Nelson L. S. Chan
ZZZunzhen Zhang
Zunzhen Zhang
Yuan LiuYuan Liu
Yuan Liu
Studies in knockout mice provide evidence that MSH2–MSH3 and the BER machinery promote trinucleotide repeat (TNR) expansion, yet how these two different repair pathways cause the mutation is unknown. Here we report the first molecular crosstalk mechanism, in which MSH2–MSH3 is used as a component of the BER machinery to cause expansion. On its own, pol β fails to copy TNRs during DNA synthesis, and bypasses them on the template strand to cause deletion. Remarkably, MSH2–MSH3 not only stimulates pol β to copy through the repeats but also enhances formation of the flap precursor for expansion. Our results provide direct evidence that MMR and BER, operating together, form a novel hybrid pathway that changes the outcome of TNR instability from deletion to expansion during the removal of oxidized bases. We propose that cells implement crosstalk strategies and share machinery when a canonical pathway is ineffective in removing a difficult lesion.

22 September 2017 in Scientific Reports
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Journal Article
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SGShiyan Gu
Shiyan Gu
YLYanhao Lai
Yanhao Lai
HCHongyu Chen
Hongyu Chen
Yuan LiuYuan Liu
Yuan Liu
ZZZunzhen Zhang
Zunzhen Zhang
Arsenic trioxide (ATO) resistance is a challenging problem in chemotherapy. However, the underlying mechanisms remain to be elucidated. In this study, we identified a high level of expression of miR-155 in a human lung adenocarcinoma A549R cell line that is highly resistant to ATO. We showed that the high level of miR-155 was associated with increased levels of cell survival, colony formation, cell migration and decreased cellular apoptosis, and this was mediated by high levels of Nrf2, NAD(P)H quinone oxidoreductase 1 (NQO1), heme oxygenase-1 (HO-1) and a high ratio of Bcl-2/Bax. Overexpression of the miR-155 mimic in A549R cells resulted in increased levels of colony formation and cell migration as well as reduced apoptosis along with increased Nrf2, NQO1 and HO-1. In contrast, silencing of miR-155 expression with its inhibitor in the cells, significantly decreased the cellular levels of Nrf2, NQO1 and HO-1 as well as the ratio of Bcl-2/Bax. This subsequently reduced the level of colony formation and cell migration facilitating ATO-induced apoptosis. Our results indicate that miR-155 mediated ATO resistance by upregulating the Nrf2 signaling pathway, but downregulating cellular apoptosis in lung cancer cells. Our study provides new insights into miR-155-mediated ATO resistance in lung cancer cells.

28 May 2019 in Cells
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Chryssostomos ChatgilialogluChryssostomos Chatgilialoglu
Chryssostomos Chatgilialoglu
Carla FerreriCarla Ferreri
Carla Ferreri
NGNicholas E. Geacintov
Nicholas E. Geacintov
Marios KrokidisMarios Krokidis
Marios Krokidis
Yuan LiuYuan Liu
Yuan Liu
PTPawlos Tsegay
Pawlos Tsegay
Purine 5′,8-cyclo-2′-deoxynucleosides (cPu) are tandem-type lesions observed among the DNA purine modifications and identified in mammalian cellular DNA in vivo. These lesions can be present in two diasteroisomeric forms, 5′R and 5′S, for each 2′-deoxyadenosine and 2′-deoxyguanosine moiety. They are generated exclusively by hydroxyl radical attack to 2′-deoxyribose units generating C5′ radicals, followed by cyclization with the C8 position of the purine base. This review describes the main recent achievements in the preparation of the cPu molecular library for analytical and DNA synthesis applications for the studies of the enzymatic recognition and repair mechanisms, their impact on transcription and genetic instability, quantitative determination of the levels of lesions in various types of cells and animal model systems, and relationships between the levels of lesions and human health, disease, and aging, as well as the defining of the detection limits and quantification protocols.

26 November 2014 in Nucleic Acids Research
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Journal Article
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MXMeng Xu
Meng Xu
YLYanhao Lai
Yanhao Lai
ZJZhongliang Jiang
Zhongliang Jiang
Michael A. TerzidisMichael A. Terzidis
Michael A. Terzidis
Annalisa MasiAnnalisa Masi
Annalisa Masi
Yuan LiuYuan Liu
Yuan Liu
5′,8-cyclo-2′-deoxypurines (cdPus) are common forms of oxidized DNA lesions resulting from endogenous and environmental oxidative stress such as ionizing radiation. The lesions can only be repaired by nucleotide excision repair with a low efficiency. This results in their accumulation in the genome that leads to stalling of the replication DNA polymerases and poor lesion bypass by translesion DNA polymerases. Trinucleotide repeats (TNRs) consist of tandem repeats of Gs and As and therefore are hotspots of cdPus. In this study, we provided the first evidence that both (5′R)- and (5′S)-5′,8-cyclo-2′-deoxyadenosine (cdA) in a CAG repeat tract caused CTG repeat deletion exclusively during DNA lagging strand maturation and base excision repair. We found that a cdA induced the formation of a CAG loop in the template strand, which was skipped over by DNA polymerase β (pol β) lesion bypass synthesis. This subsequently resulted in the formation of a long flap that was efficiently cleaved by flap endonuclease 1, thereby leading to repeat deletion. Our study indicates that accumulation of cdPus in the human genome can lead to TNR instability via a unique lesion bypass by pol β.