Simone Balocco

Dr. Simone Balocco


Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
13 February 2019 in Journal of The Royal Society Interface
Verified
Journal Article
Closed access
ABAna Victoria Ponce Bobadilla
Ana Victoria Ponce Bobadilla
JAJazmine Arevalo
Jazmine Arevalo
ESEduard Sarró
Eduard Sarró
HBHelen M. Byrne
Helen M. Byrne
Philip K. MainiPhilip K. Maini
Philip K. Maini
TATomás Alarcón
Tomás Alarcón
The scratch assay is an in vitro technique used to assess the contribution of molecular and cellular mechanisms to cell migration. The assay can also be used to evaluate therapeutic compounds before clinical use. Current quantification methods of scratch assays deal poorly with irregular cell-free areas and crooked leading edges which are features typically present in the experimental data. We introduce a new migration quantification method, called ‘monolayer edge velocimetry’, that permits analysis of low-quality experimental data and better statistical classification of migration rates than standard quantification methods. The new method relies on quantifying the horizontal component of the cell monolayer velocity across the leading edge. By performing a classification test on in silico data, we show that the method exhibits significantly lower statistical errors than standard methods. When applied to in vitro data, our method outperforms standard methods by detecting differences in the migration rates between different cell groups that the other methods could not detect. Application of this new method will enable quantification of migration rates from in vitro scratch assay data that cannot be analysed using existing methods.

1 March 2014 in Computerized Medical Imaging and Graphics
Verified
Journal Article
Open access
SBSimone Balocco
Simone Balocco
CGCarlo Gatta
Carlo Gatta
FCFrancesco Ciompi
Francesco Ciompi
AWAndreas Wahle
Andreas Wahle
PRPetia Radeva
Petia Radeva
Ioannis A KakadiarisIoannis A Kakadiaris
Ioannis A Kakadiaris
This paper describes an evaluation framework that allows a standardized and quantitative comparison of IVUS lumen and media segmentation algorithms. This framework has been introduced at the MICCAI 2011 Computing and Visualization for (Intra)Vascular Imaging (CVII) workshop, comparing the results of eight teams that participated. We describe the available data-base comprising of multi-center, multi-vendor and multi-frequency IVUS datasets, their acquisition, the creation of the reference standard and the evaluation measures. The approaches address segmentation of the lumen, the media, or both borders; semi- or fully-automatic operation; and 2-D vs. 3-D methodology. Three performance measures for quantitative analysis have been proposed. The results of the evaluation indicate that segmentation of the vessel lumen and media is possible with an accuracy that is comparable to manual annotation when semi-automatic methods are used, as well as encouraging results can be obtained also in case of fully-automatic segmentation. The analysis performed in this paper also highlights the challenges in IVUS segmentation that remains to be solved.

1 August 2010 in Ultrasound in Medicine & Biology
Verified
Journal Article
Closed access
SBSimone Balocco
Simone Balocco
CGCarlo Gatta
Carlo Gatta
OPOriol Pujol
Oriol Pujol
JMJosepa Mauri
Josepa Mauri
PRPetia Radeva
Petia Radeva

1 August 2012 in Medical Image Analysis
Verified
Journal Article
Closed access
FCFrancesco Ciompi
Francesco Ciompi
OPOriol Pujol
Oriol Pujol
CGCarlo Gatta
Carlo Gatta
MAMarina Alberti
Marina Alberti
SBSimone Balocco
Simone Balocco
PRPetia Radeva
Petia Radeva

1 December 2019 in Sensors
Verified
Journal Article
Open access
PDF file
MWMichael Wirth
Michael Wirth
GFGabriella Fischer
Gabriella Fischer
JVJorge Verdú
Jorge Verdú
LRLisa Reissner
Lisa Reissner
SBSimone Balocco
Simone Balocco
MCMaurizio Calcagni
Maurizio Calcagni
This study aims to compare a new inertial measurement unit based system with the highly accurate but complex laboratory gold standard, an optoelectronic motion capture system. Inertial measurement units are sensors based on accelerometers, gyroscopes, and/or magnetometers. Ten healthy subjects were recorded while performing flexion-extension and radial-ulnar deviation movements of their right wrist using inertial sensors and skin markers. Maximum range of motion during these trials and mean absolute difference between the systems were calculated. A difference of 10° ± 5° for flexion-extension and 2° ± 1° for radial-ulnar deviation was found between the two systems with absolute range of motion values of 126° and 50° in the respective axes. A Wilcoxon rank sum test resulted in a no statistical differences between the systems with p-values of 0.24 and 0.62. The observed results are even more precise than reports from previous studies, where differences between 14° and 27° for flexion-extension and differences between 6° and 17° for radial-ulnar deviation were found. Effortless and fast applicability, good precision, and low inter-observer variability make inertial measurement unit based systems applicable to clinical settings.

28 May 2010 in Physics in Medicine & Biology
Verified
Journal Article
Closed access
SBSimone Balocco
Simone Balocco
OBOlivier Basset
Olivier Basset
GCGuy Courbebaisse
Guy Courbebaisse
Enrico BoniEnrico Boni
Enrico Boni
Attilio FrangiAttilio Frangi
Attilio Frangi
CCChristian Cachard
Christian Cachard
Human arteries affected by atherosclerosis are characterized by altered wall viscoelastic properties. The possibility of noninvasively assessing arterial viscoelasticity in vivo would significantly contribute to the early diagnosis and prevention of this disease. This paper presents a noniterative technique to estimate the viscoelastic parameters of a vascular wall Zener model. The approach requires the simultaneous measurement of flow variations and wall displacements, which can be provided by suitable ultrasound Doppler instruments. Viscoelastic parameters are estimated by fitting the theoretical constitutive equations to the experimental measurements using an ARMA parameter approach. The accuracy and sensitivity of the proposed method are tested using reference data generated by numerical simulations of arterial pulsation in which the physiological conditions and the viscoelastic parameters of the model can be suitably varied. The estimated values quantitatively agree with the reference values, showing that the only parameter affected by changing the physiological conditions is viscosity, whose relative error was about 27% even when a poor signal-to-noise ratio is simulated. Finally, the feasibility of the method is illustrated through three measurements made at different flow regimes on a cylindrical vessel phantom, yielding a parameter mean estimation error of 25%.