Vipin Babu

Dr. Vipin Babu

Department of Chemistry, University of Zurich, Zürich, Switzerland
orcid

Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 November 2014 in Nature Cell Biology
Verified
Journal Article
Open access
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MMMichael M. Mueller
Michael M. Mueller
LCLaia Castells-Roca
Laia Castells-Roca
VBVipin Babu
Vipin Babu
MEMaria A. Ermolaeva
Maria A. Ermolaeva
Roman-Ulrich MüllerRoman-Ulrich Müller
Roman-Ulrich Müller
BSBjörn Schumacher
Björn Schumacher
Genome maintenance defects cause complex disease phenotypes characterized by developmental failure, cancer susceptibility and premature ageing. It remains poorly understood how DNA damage responses function during organismal development and maintain tissue functionality when DNA damage accumulates with ageing. Here we show that the FOXO transcription factor DAF-16 is activated in response to DNA damage during development, whereas the DNA damage responsiveness of DAF-16 declines with ageing. We find that in contrast to its established role in mediating starvation arrest, DAF-16 alleviates DNA-damage-induced developmental arrest and even in the absence of DNA repair promotes developmental growth and enhances somatic tissue functionality. We demonstrate that the GATA transcription factor EGL-27 co-regulates DAF-16 target genes in response to DNA damage and together with DAF-16 promotes developmental growth. We propose that EGL-27/GATA activity specifies DAF-16-mediated DNA damage responses to enable developmental progression and to prolong tissue functioning when DNA damage persists.

1 August 2017 in Cell Reports
Verified
Journal Article
Open access
DEDiletta Edifizi
Diletta Edifizi
HNHendrik Nolte
Hendrik Nolte
VBVipin Babu
Vipin Babu
LCLaia Castells-Roca
Laia Castells-Roca
MMMichael M. Mueller
Michael M. Mueller
BSBjörn Schumacher
Björn Schumacher
DNA damage causally contributes to aging and age-related diseases. Mutations in nucleotide excision repair (NER) genes cause highly complex congenital syndromes characterized by growth retardation, cancer susceptibility, and accelerated aging in humans. Orthologous mutations in Caenorhabditis elegans lead to growth delay, genome instability, and accelerated functional decline, thus allowing investigation of the consequences of persistent DNA damage during development and aging in a simple metazoan model. Here, we conducted proteome, lipidome, and phosphoproteome analysis of NER-deficient animals in response to UV treatment to gain comprehensive insights into the full range of physiological adaptations to unrepaired DNA damage. We derive metabolic changes indicative of a tissue maintenance program and implicate an autophagy-mediated proteostatic response. We assign central roles for the insulin-, EGF-, and AMPK-like signaling pathways in orchestrating the adaptive response to DNA damage. Our results provide insights into the DNA damage responses in the organismal context.

1 December 2014 in DNA Repair
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Journal Article
Closed access
VBVipin Babu
Vipin Babu
KHKay Hofmann
Kay Hofmann
BSBjörn Schumacher
Björn Schumacher

8 November 2020 in ChemMedChem
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Journal Article
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RPRoxane Padrutt
Roxane Padrutt
VBVipin Babu
Vipin Babu
SKSimon Klingler
Simon Klingler
MKMartina Kalt
Martina Kalt
FSFrank Schumer
Frank Schumer
Bernhard SpinglerBernhard Spingler
Bernhard Spingler

20 October 2020 in Chemical Communications
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Journal Article
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RRRiccardo Rubbiani
Riccardo Rubbiani
WKWenyu Wu Klingler
Wenyu Wu Klingler
ANAnu Naik
Anu Naik
MLMichele Larocca
Michele Larocca
LSLukas Schneider
Lukas Schneider
Bernhard SpinglerBernhard Spingler
Bernhard Spingler
Novel tetraplatinated metalloporphyrin-based photosensitizers (PSs) are reported, which show excellent phototoxic indexes (PIs) up to 5800 against HeLa cells, which is, to the best of our knowledge, the highest value reported for any porphyrin so far. Furthermore, 67Zn isotope labelling allowed the determination of the ratio of zinc to platinum inside the cells using ICP-MS.

11 October 2019 in Photochemical & Photobiological Sciences
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Journal Article
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LSLukas Schneider
Lukas Schneider
MLMichele Larocca
Michele Larocca
WWWenyu Wu
Wenyu Wu
VBVipin Babu
Vipin Babu
RPRoxane Padrutt
Roxane Padrutt
Bernhard SpinglerBernhard Spingler
Bernhard Spingler
We report the first exocyclically metallated tetrapyridinoporphyrazine, [tetrakis-(trans-Pt(NH3)2Cl)-tetra(3,4-pyrido)porphyrazine-zinc(II)](NO3)4 (4), synthesized in a multistep synthesis starting from 3,4-pyridinedicarbonitrile (1). The synthetic procedure involved a platination reaction of the intermediate tetra(3,4-pyrido)porphyrazine-zinc(II) (2), whereby the zinc(II) enhanced the solubility of the intermediate enabling the platination reaction. A similar approach to synthesize [tetrakis-(trans-Pt(NH3)2Cl)-tetra(3,4-pyrido)porphyrazine](NO3)4 (5) failed due to the unsuitable solubility properties of the intermediate tetra(3,4-pyrido)porphyrazine (3). The final product 4 and the intermediates were characterized, the photochemical and photophysical properties were determined and the photocytotoxicities were investigated. We demonstrate that the platinated tetra-pyridinoporphyrazine 4 is a potential photosensitizer for photodynamic therapy (PDT).