Gülsüm Gençoğlan

Prof. Dr. Gülsüm Gençoğlan

orcid

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 November 2024 in Scientific Data
Verified
Journal Article
Open access
PDF file
AYAbdurrahim Yilmaz
Abdurrahim Yilmaz
SYSirin Pekcan Yasar
Sirin Pekcan Yasar
GGGülsüm Gençoğlan
Gülsüm Gençoğlan
Burak TemelkuranBurak Temelkuran
Burak Temelkuran
Skin lesion datasets provide essential information for understanding various skin conditions and developing effective diagnostic tools. They aid the artificial intelligence-based early detection of skin cancer, facilitate treatment planning, and contribute to medical education and research. Published large datasets have partially coverage the subclassifications of the skin lesions. This limitation highlights the need for more expansive and varied datasets to reduce false predictions and help improve the failure analysis for skin lesions. This study presents a diverse dataset comprising 12,345 dermatoscopic images with 40 subclasses of skin lesions, collected in Turkiye, which comprises different skin types in the transition zone between Europe and Asia. Each subgroup contains high-resolution images and expert annotations, providing a strong and reliable basis for future research. The detailed analysis of each subgroup provided in this study facilitates targeted research endeavors and enhances the depth of understanding regarding the skin lesions. This dataset distinguishes itself through a diverse structure with its 5 super classes, 15 main classes, 40 subclasses and 12,345 high-resolution dermatoscopic images.

31 July 2022 in Mycoses
Verified
Journal Article
Closed access
AYAbdurrahim Yilmaz
Abdurrahim Yilmaz
FGFatih Göktay
Fatih Göktay
RVRahmetullah Varol
Rahmetullah Varol
GGGülsüm Gençoğlan
Gülsüm Gençoğlan
HUHuseyin Uvet
Huseyin Uvet

30 August 2022 in Journal of Clinical Medicine
Verified
Journal Article
Open access
PDF file
AYAbdurrahim Yilmaz
Abdurrahim Yilmaz
GGGülsüm Gençoğlan
Gülsüm Gençoğlan
RVRahmetullah Varol
Rahmetullah Varol
ADAli Anil Demircali
Ali Anil Demircali
MKMeysam Keshavarz
Meysam Keshavarz
HUHuseyin Uvet
Huseyin Uvet
Dermoscopy is the visual examination of the skin under a polarized or non-polarized light source. By using dermoscopic equipment, many lesion patterns that are invisible under visible light can be clearly distinguished. Thus, more accurate decisions can be made regarding the treatment of skin lesions. The use of images collected from a dermoscope has both increased the performance of human examiners and allowed the development of deep learning models. The availability of large-scale dermoscopic datasets has allowed the development of deep learning models that can classify skin lesions with high accuracy. However, most dermoscopic datasets contain images that were collected from digital dermoscopic devices, as these devices are frequently used for clinical examination. However, dermatologists also often use non-digital hand-held (optomechanical) dermoscopes. This study presents a dataset consisting of dermoscopic images taken using a mobile phone-attached hand-held dermoscope. Four deep learning models based on the MobileNetV1, MobileNetV2, NASNetMobile, and Xception architectures have been developed to classify eight different lesion types using this dataset. The number of images in the dataset was increased with different data augmentation methods. The models were initialized with weights that were pre-trained on the ImageNet dataset, and then they were further fine-tuned using the presented dataset. The most successful models on the unseen test data, MobileNetV2 and Xception, had performances of 89.18% and 89.64%. The results were evaluated with the 5-fold cross-validation method and compared. Our method allows for automated examination of dermoscopic images taken with mobile phone-attached hand-held dermoscopes.

29 November 2022 in Nature Communications
Verified
Journal Article
Open access
PDF file
RVRahmetullah Varol
Rahmetullah Varol
ZKZeynep Karavelioglu
Zeynep Karavelioglu
SOSevde Omeroglu
Sevde Omeroglu
GAGizem Aydemir
Gizem Aydemir
AKAslihan Karadag
Aslihan Karadag
HUHuseyin Uvet
Huseyin Uvet
Accurate assessment of cell stiffness distribution is essential due to the critical role of cell mechanobiology in regulation of vital cellular processes like proliferation, adhesion, migration, and motility. Stiffness provides critical information in understanding onset and progress of various diseases, including metastasis and differentiation of cancer. Atomic force microscopy and optical trapping set the gold standard in stiffness measurements. However, their widespread use has been hampered with long processing times, unreliable contact point determination, physical damage to cells, and unsuitability for multiple cell analysis. Here, we demonstrate a simple, fast, label-free, and high-resolution technique using acoustic stimulation and holographic imaging to reconstruct stiffness maps of single cells. We used this acousto-holographic method to determine stiffness maps of HCT116 and CTC-mimicking HCT116 cells and differentiate between them. Our system would enable widespread use of whole-cell stiffness measurements in clinical and research settings for cancer studies, disease modeling, drug testing, and diagnostics.

13 November 2019 in Acta Parasitologica
Verified
Journal Article
Closed access
PDF file
AÖAhmet Özbilgin
Ahmet Özbilgin
GGGülsüm Gençoğlan
Gülsüm Gençoğlan
VTVarol TUNALI
Varol TUNALI
IÇİbRahim Çavuş
İbRahim Çavuş
AYAhmet Yıldırım
Ahmet Yıldırım
MHMehmet Harman
Mehmet Harman
Purpose Due to mass population movements driven by internal conflicts and wars, cutaneous leishmaniasis (CL) is becoming increasingly important in Turkey. This study is aimed at determining the...

1 November 2012 in Facial Plastic Surgery Clinics of North America
Verified
Journal Article
Closed access
GGGülsüm Gençoğlan
Gülsüm Gençoğlan
FOFezal Ozdemir
Fezal Ozdemir