Jiayu Duan

Dr. Jiayu Duan


Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 March 2020 in IEEE Transactions on Radiation and Plasma Medical Sciences
Verified
Journal Article
Closed access
SCShaojie Chang
Shaojie Chang
XCXi Chen
Xi Chen
JDJiayu Duan
Jiayu Duan
XMXuanqin Mou
Xuanqin Mou
Ring artifacts degrade the quality of reconstructed images in cone beam computed tomography (CBCT). In this work, we propose a hybrid ring artifact reduction algorithm in CT images based on a convolutional neural network (CNN), which fuses the information from the image domain and sinogram domain corrected images. The proposed method consists of three steps. First, the database for CNN training is established, which consists of artifact-free, ring artifact and sinogram domain corrected images. Second, the original and sinogram domain corrected images are input to the trained CNN to generate an image with less artifacts. Finally, we use image mutual correlation to generate a hybrid corrected image by fusing the information from ring artifacts reduction in the sinogram domain and output by CNN. Both simulated and real experiments were performed to verify the proposed method. Experimental results show that the proposed method can suppress the ring artifacts effectively without the introduction of structure distortion.

24 June 2022 in Frontiers in Cardiovascular Medicine
Verified
Journal Article
Open access
JRJingjing Ren
Jingjing Ren
DLDongwei Liu
Dongwei Liu
GLGuangpu Li
Guangpu Li
JDJiayu Duan
Jiayu Duan
JDJiancheng Dong
Jiancheng Dong
ZLZhangsuo Liu
Zhangsuo Liu
Background: Diabetic kidney disease (DKD) patients are facing an extremely high risk of cardiovascular disease (CVD), which is a major cause of death for DKD patients. We aimed to build a deep learning model to predict CVD risk among DKD patients and perform risk stratifying, which could help them perform early intervention and improve personal health management. Methods: A retrospective cohort study was conducted to assess the risk of the occurrence of composite cardiovascular disease, which includes coronary heart disease, cerebrovascular diseases, congestive heart failure, and peripheral artery disease, in DKD patients. A least absolute shrinkage and selection operator (LASSO) regression was used to perform the variable selection. A deep learning-based survival model called DeepSurv, based on a feed-forward neural network was developed to predict CVD risk among DKD patients. We compared the model performance with the conventional Cox proportional hazards (CPH) model and the Random survival forest (RSF) model using the concordance index (C-index), the area under the curve (AUC), and integrated Brier scores (IBS). Results: We recruited 890 patients diagnosed with DKD in this retrospective study. During a median follow-up of 10.4 months, there are 289 patients who sustained a subsequent CVD. Seven variables, including age, high density lipoprotein (HDL), hemoglobin (Hb), systolic blood pressure (SBP), smoking status, 24 h urinary protein excretion, and total cholesterol (TC), chosen by LASSO regression were used to develop the predictive model. The DeepSurv model showed the best performance, achieved a C-index of 0.767(95% confidence intervals [CI]: 0.717–0.817), AUC of 0.780(95%CI: 0.721–0.839), and IBS of 0.067 in the validation set. Then we used the cut-off value determined by ROC (receiver operating characteristic) curve to divide the patients into different risk groups. Moreover, the DeepSurv model was also applied to develop an online calculation tool for patients to conduct risk monitoring. Conclusion: A deep-learning-based predictive model using seven clinical variables can effectively predict CVD risk among DKD patients and perform risk stratification. An online calculator allows its easy implementation.

17 April 2024 in Renal Failure
Verified
Journal Article
Open access
QYQianqian Yan
Qianqian Yan
ZZZihao Zhao
Zihao Zhao
DLDongwei Liu
Dongwei Liu
JLJia Li
Jia Li
SPShaokang Pan
Shaokang Pan
ZLZhangsuo Liu
Zhangsuo Liu
Immunoglobulin A nephropathy (IgAN), the most common glomerulonephritis worldwide and a leading cause of chronic kidney disease, affects all age groups [1–3]. The mucosal immune system-kidney axis,...

10 February 2023 in Human Genomics
Verified
Journal Article
Open access
PDF file
JLJia Li
Jia Li
DLDongwei Liu
Dongwei Liu
JRJingjing Ren
Jingjing Ren
GLGuangpu Li
Guangpu Li
ZZZihao Zhao
Zihao Zhao
ZLZhangsuo Liu
Zhangsuo Liu
Background: RNA methylation is a widely known post-transcriptional regulation which exists in many cancer and immune system diseases. However, the potential role and crosstalk of five types RNA methylation regulators in diabetic nephropathy (DN) and immune microenvironment remain unclear. Methods: The mRNA expression of 37 RNA modification regulators and RNA modification regulators related genes were identified in 112 samples from 5 Gene Expression Omnibus datasets. Nonnegative Matrix Factorization clustering method was performed to determine RNA modification patterns. The ssGSEA algorithms and the expression of human leukocyte antigen were employed to assess the immune microenvironment characteristics. Risk model based on differentially expression genes responsible for the modification regulators was constructed to evaluate its predictive capability in DN patients. Furthermore, the results were validated by using immunofluorescence co-localizations and protein experiments in vitro. Results: We found 24 RNA methylation regulators were significant differently expressed in glomeruli in DN group compared with control group. Four methylation-related genes and six RNA regulators were introduced into riskScore model using univariate Logistic regression and integrated LASSO regression, which could precisely distinguish the DN and healthy individuals. Group with high-risk score was associated with high immune infiltration. Three distinct RNA modification patterns were identified, which has significant differences in immune microenvironment, biological pathway and eGFR. Validation analyses showed the METTL3, ADAR1, DNMT1 were upregulated whereas YTHDC1 was downregulated in DN podocyte cell lines comparing with cells cultured by the normal glucose. Conclusion: Our study reveals that RNA methylation regulators and immune infiltration regulation play critical roles in the pathogenesis of DN. The bioinformatic analyses combine with verification in vitro could provide robust evidence for identification of predictive RNA methylation regulators in DN.

12 April 2023 in Scientific Reports
Verified
Journal Article
Open access
PDF file
LFLi Fang
Li Fang
GLGuangpu Li
Guangpu Li
JRJingjing Ren
Jingjing Ren
JDJiayu Duan
Jiayu Duan
JDJiancheng Dong
Jiancheng Dong
ZLZhangsuo Liu
Zhangsuo Liu
Sodium–glucose cotransporter 2 inhibitors (SGLT2i) are recommended for type 2 diabetes mellitus patients with impaired renal function, but the actual situation of SGLT2i using is unclear. Therefore, in this real-world study, we analyzed the treatment scheme and clinical characteristics of SGLT2i in patients with diabetic kidney disease (DKD). We included DKD patients hospitalized in the First Affiliated Hospital of Zhengzhou University from October 2017 to March 2020. The Apriori algorithm of association rules was used to analysis treatment scheme prescribing SGLT2i and other different combinations of hypoglycemic drugs. SGLT2i was used in 781 (12.3%) of 6336 DKD patients, both number and proportion of patients using SGLT2i increased from 2017 to 2020 (1.9% to 33%). Nighty-eight percent of all DKD patients using SGLT2i were combined with other glucose-lowering agents, and insulin, metformin and alpha-glucosidase inhibitors are most commonly used in combination with hypoglycemic drugs. Multivariate analysis showed that compared with non-SGLT2i group, patients using SGLT2i were associated with younger age, higher BMI, higher HbA1c, preserved kidney function, dyslipidemia and combined with ACEI/ARB and statins. In this real-world study, use of SGLT2i in DKD patients is still low. Most patients performed younger age and in the early stages of chronic kidney disease with poor glycemic control. Clinical inertia should be overcome to fully exert the cardiorenal protective effects of SGLT2 inhibitors, with attention to rational drug use.

5 December 2020
Verified
Conference Paper
Open access
YLYang Li
Yang Li
JDJiayu Duan
Jiayu Duan
SZShaohua Zhi
Shaohua Zhi
JCJianmei Cai
Jianmei Cai
XMXuanqin Mou
Xuanqin Mou
X-ray has been widely used in medical diagnosis and other fields with the non-destructive merit. Recently, the cold cathode X-ray source based on field emission, which are different from traditional hot cathode X-ray source, have overcome the limitations of traditional X-ray source due to their small size, addressable, and integrated characteristics, making CT imaging methods can be further developed. Especially X-ray sources using ZnO nanowires as cold cathodes can densely integrate a large number of X-ray sources into flat panel devices. When we use this flat X-ray source to light up multiple sources to scan an object at the same time, small source spacing will cause inevitable projection aliasing. Therefore, we propose an image restoration algorithm for projection aliasing, and use the method of projection rearrangement to remove projection aliasing. In addition, we estimated the spectrum of the flat-panel X-ray source by solving the spectral model parameters from the attenuation data of materials of different thicknesses, and used the spectral information to simulate the effect of the proposed image restoration method on the new photon counting detector. The results of simulation experiments show the effectiveness of this method and the potential of this new imaging mode.