Shaojie Chang

Dr. Shaojie Chang

Mayo Clinic, Rochester, Minnesota, USA

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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26 October 2022 in IEEE Transactions on Geoscience and Remote Sensing
Verified
Journal Article
Closed access
NLNaihao Liu
Naihao Liu
JWJiale Wang
Jiale Wang
JGJinghuai Gao
Jinghuai Gao
KYKai Yu
Kai Yu
YLYihuai Lou
Yihuai Lou
SCShaojie Chang
Shaojie Chang
Attenuation of incoherent noise is an effective way to improve signal-to-noise ratio (SNR) of seismic data. Recently, supervised deep learning based methods have been widely utilized for seismic image denoising, which often need plenty of noise-free data as training labels. However, noise-free seismic data are often unavailable in field applications. We propose an unsupervised learning method (NS2NS) to train a denoising network by using single noisy seismic data. The proposed model is based on two basic truths of seismic data: (1) High self-similarity of seismic data; (2) Spatially independence of incoherent noise in seismic data. To implement the proposed method, we first build a sampling workflow to generate paired noisy images based on single noisy seismic image. Moreover, we create similar noisy images that are similar but different with the original noisy image by using the proposed self-similar sampler. The original noisy images and generated similar noisy images are then fused by using a suggested Bernoulli sampler to create new paired noisy images. These new paired noisy images are used as the input and target of the denoising model, respectively. Next, an end-to-end convolutional neural network (CNN) is built for seismic image denoising, which aims to learn features of valid signals and suppress unpredictable random noise. Finally, we apply the proposed NS2NS method to both synthetic and field data. The results show that our proposed method can effectively suppress incoherent noise while preserving valid signals.

26 March 2020 in IEEE Transactions on Radiation and Plasma Medical Sciences
Verified
Journal Article
Closed access
SCShaojie Chang
Shaojie Chang
XCXi Chen
Xi Chen
JDJiayu Duan
Jiayu Duan
XMXuanqin Mou
Xuanqin Mou
Ring artifacts degrade the quality of reconstructed images in cone beam computed tomography (CBCT). In this work, we propose a hybrid ring artifact reduction algorithm in CT images based on a convolutional neural network (CNN), which fuses the information from the image domain and sinogram domain corrected images. The proposed method consists of three steps. First, the database for CNN training is established, which consists of artifact-free, ring artifact and sinogram domain corrected images. Second, the original and sinogram domain corrected images are input to the trained CNN to generate an image with less artifacts. Finally, we use image mutual correlation to generate a hybrid corrected image by fusing the information from ring artifacts reduction in the sinogram domain and output by CNN. Both simulated and real experiments were performed to verify the proposed method. Experimental results show that the proposed method can suppress the ring artifacts effectively without the introduction of structure distortion.

2 February 2024 in Physics in Medicine & Biology
Verified
Journal Article
Closed access
HGHao Gong
Hao Gong
ZAZaki Ahmed
Zaki Ahmed
SCShaojie Chang
Shaojie Chang
EKEmily K Koons
Emily K Koons
JTJamison E Thorne
Jamison E Thorne
SLShuai Leng
Shuai Leng
Objectives. To improve quality of coronary CT angiography (CCTA) images using a generalizable motion-correction algorithm. Approach . A neural network with attention gate and spatial transformer (ATOM) was developed to correct coronary motion. Phantom and patient CCTA images (39 males, 32 females, age range 19–92, scan date 02/2020 to 10/2021) retrospectively collected from dual-source CT were used to create training, development, and testing sets corresponding to 140- and 75 ms temporal resolution, with 75 ms images as labels. To test generalizability, ATOM was deployed for locally adaptive motion-correction in both 140- and 75 ms patient images. Objective metrics were used to assess motion-corrupted and corrected phantom and patient images, including structural-similarity-index (SSIM), dice-similarity-coefficient (DSC), peak-signal-noise-ratio (PSNR), and normalized root-mean-square-error (NRMSE). In objective quality assessment, ATOM was compared with several baseline networks, including U-net, U-net plus attention gate, U-net plus spatial transformer, VDSR, and ResNet. Two cardiac radiologists independently interpreted motion-corrupted and -corrected images at 75 and 140 ms in a blinded fashion and ranked diagnostic image quality (worst to best: 1–4, no ties). Main results . ATOM improved quality metrics ( p < 0.05) before/after correction: in phantom, SSIM 0.87/0.95, DSC 0.85/0.93, PSNR 19.4/22.5, NRMSE 0.38/0.27; in patient images, SSIM 0.82/0.88, DSC 0.88/0.90, PSNR 30.0/32.0, NRMSE 0.16/0.12. ATOM provided more consistent improvement of objective image quality, compared to the presented baseline networks. The motion-corrected images received better ranks than un-corrected at the same temporal resolution ( p < 0.05): 140 ms images 1.65/2.25, and 75 ms images 3.1/3.2. The motion-corrected 75 ms images received the best rank in 65% of testing cases. A fair-to-good inter-reader agreement was observed (Kappa score 0.58). Significance . ATOM reduces motion artifacts, improving visualization of coronary arteries. This algorithm can be used to virtually improve temporal resolution in both single- and dual-source CT.

31 January 2023 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
SCShaojie Chang
Shaojie Chang
YGYongfeng Gao
Yongfeng Gao
MPMarc Jason Pomeroy
Marc Jason Pomeroy
TBTi Bai
Ti Bai
HZHao Zhang
Hao Zhang
ZLZhengrong Liang
Zhengrong Liang
In this study, we proposed a computer-aided diagnosis (CADx) framework under dual-energy spectral CT (DECT), which operates directly on the transmission data in the pre-log domain, called CADxDE, to explore the spectral information for lesion diagnosis. The CADxDE includes material identification and machine learning (ML) based CADx. Benefits from DECT’s capability of performing virtual monoenergetic imaging with the identified materials, the responses of different tissue types (e.g., muscle, water, and fat) in lesions at each energy can be explored by ML for CADx. Without losing essential factors in the DECT scan, a pre-log domain model-based iterative reconstruction is adopted to obtain decomposed material images, which are then used to generate the virtual monoenergetic images (VMIs) at selected ${n}$ energies. While these VMIs have the same anatomy, their contrast distribution patterns contain rich information along with the ${n}$ energies for tissue characterization. Thus, a corresponding ML-based CADx is developed to exploit the energy-enhanced tissue features for differentiating malignant from benign lesions. Specifically, an original image-driven multi-channel three-dimensional convolutional neural network (CNN) and extracted lesion feature-based ML CADx methods are developed to show the feasibility of CADxDE. Results from three pathologically proven clinical datasets showed 4.01% to 14.25% higher AUC (area under the receiver operating characteristic curve) scores than the scores of both the conventional DECT data (high and low energy spectrum separately) and the conventional CT data. The mean gain >9.13% in AUC scores indicated that the energy spectral-enhanced tissue features from CADxDE have great potential to improve lesion diagnosis performance.

20 November 2023 in IEEE Transactions on Computational Imaging
Verified
Journal Article
Closed access
XCXi Chen
Xi Chen
CZChaoyang Zhang
Chaoyang Zhang
TBTi Bai
Ti Bai
SCShaojie Chang
Shaojie Chang
Photon counting spectral computed tomography (PCCT) can produce reconstructed attenuation maps in different energy channels, reflecting the energy properties of the scanned object. Due to the limited photon numbers of each energy channel and the nonideal detector response, the reconstructed images usually contain considerable noise. With the development of the deep learning (DL) technique, different DL-based models have been proposed for noise reduction in CT. However, most of the models require paired datasets for training, which are rarely available in practical imaging procedures. Inspired by the structural similarities of each channel's reconstructed image, we proposed a self-supervised learning based PCCT image enhancement framework via multi-spectral channels (S2MS). In the S2MS framework, both the input and output labels are noisy images. Specifically, one single energy channel image was used as output. The other channel images and a full-energy image were used as input to train the network, which can fully use the spectral data information without extra cost. Experiments on simulated and real noisy data demonstrate that the proposed S2MS model can suppress noise and preserve details more effectively than traditional DL models, and has the potential to improve PCCT image quality in clinical applications

4 August 2015
Verified
Book Chapter
Closed access
PDF file
SCShaojie Chang
Shaojie Chang
YZYanbo Zhang
Yanbo Zhang
TBTi Bai
Ti Bai
XCXi Chen
Xi Chen
QXQiong Xu
Qiong Xu
XMXuanqin Mou
Xuanqin Mou