Duygu Harmancı

Dr. Duygu Harmancı

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
6 January 2023 in Magnetochemistry
Verified
Journal Article
Open access
PDF file
SBSimge Balaban
Simge Balaban
DHDuygu Harmancı
Duygu Harmancı
NUNursima Ucar
Nursima Ucar
SESerap Evran
Serap Evran
STSuna Timur
Suna Timur
In recent years, magnetic nanoparticles (MNPs) have been widely used in many fields due to their advantageous properties, such as biocompatibility, easy modifiability, and high chemical stability. One of these areas is the detection of cancer. It is essential to use existing biomarkers, such as microRNAs (miRNAs), for the early diagnosis of this disease. miRNAs are challenging to distinguish and detect in biological samples because they are small, circulating molecules. It is necessary to use more sensitive and feature-rich systems. Thanks to their large surface areas and magnetic moments, MNPs allow easy separation of miRNA at low concentrations from complex samples (urine and blood) and rapid and specific detection in biosensing systems. Here, we discussed the synthesis and characterization methods of MNPs, their stabilization, and MNP-based biosensors in terms of miRNA detection. We considered the challenges and prospects of these biosensor systems in evaluating the development stages, sensitivity, and selectivity.

3 May 2017 in Biomedical Reports
Verified
Journal Article
Closed access
PDF file
DHDuygu Harmancı
Duygu Harmancı
EEErdogan Pekcan Erkan
Erdogan Pekcan Erkan
AKAyse Kocak
Ayse Kocak
GAGul Guner Akdogan
Gul Guner Akdogan
Fibrotic skin diseases are characterized by the accumulation of collagen. The hallmarks of fibrotic skin diseases are unbalanced fibroblast proliferation and differentiation, extracellular matrix production and transforming growth factor‑β signalling. Numerous studies have investigated the possibility that microRNAs (miRNAs or miRs) are involved in the pathogenesis of certain fibrotic diseases, including skin, heart, lung and liver diseases. miRNAs are a class of small non‑coding RNAs, which modify gene expression by binding to target messenger RNA (mRNA) and blocking the translation or inducing the degradation of target mRNA. The biological relevance of miRNAs has been investigated in physiological and pathological conditions, and there is increasing evidence that the miR‑29 family is associated with fibrotic diseases. The aim of the present review is to provide an up‑to‑date summary of current knowledge on the latest developments associated with the miR‑29 family and fibrotic skin diseases.

7 September 2022 in Biosensors
Verified
Journal Article
Open access
PDF file
SBSimge Balaban
Simge Balaban
EMEzgi Man Ezgi Man
Ezgi Man Ezgi Man
DHDuygu Harmancı
Duygu Harmancı
SRSERIFE TOZAN RUZGAR
SERIFE TOZAN RUZGAR
SŞSerdar ŞANLI
Serdar ŞANLI
STSuna Timur
Suna Timur
Diagnostic biomarkers based on epigenetic changes such as DNA methylation are promising tools for early cancer diagnosis. However, there are significant difficulties in directly and specifically detecting methylated DNA regions. Here, we report an electrochemical sensing system based on magnetic nanoparticles that enable a quantitative and selective analysis of the methylated septin9 (mSEPT9) gene, which is considered a diagnostic marker in early stage colorectal cancer (CRC). Methylation levels of SEPT9 in CRC samples were successfully followed by the selective recognition ability of a related peptide nucleic acid (PNA) after hybridization with DNA fragments in human patients’ serums and plasma (n = 10). Moreover, this system was also adapted into a point-of-care (POC) device for a one-step detection platform. The detection of mSEPT9 demonstrated a limit of detection (LOD) value of 0.37% and interference-free measurement in the presence of branched-chain amino acid transaminase 1 (BCAT1) and SRY box transcription factor 21 antisense divergent transcript 1 (SOX21-AS1). The currently proposed functional platform has substantial prospects in translational applications of early CRC detection.

3 March 2022 in Talanta
Verified
Journal Article
Closed access
CDCeren Durmus
Ceren Durmus
SHSimge Balaban Hanoglu
Simge Balaban Hanoglu
DHDuygu Harmancı
Duygu Harmancı
HMHichem Moulahoum
Hichem Moulahoum
KTKerem Tok
Kerem Tok
STSuna Timur
Suna Timur

10 January 2022 in Biosensors and Bioelectronics: X
Verified
Journal Article
Open access
DBDuygu Beduk
Duygu Beduk
JFJosé Ilton de Oliveira Filho
José Ilton de Oliveira Filho
TBTutku Beduk
Tutku Beduk
DHDuygu Harmancı
Duygu Harmancı
FZFigen Zihnioglu
Figen Zihnioglu
STSuna Timur
Suna Timur
Point of care (PoC) devices are highly demanding to control current pandemic, originated from severe acute respiratory syndrome Coronavirus 2 (SARS-CoV-2). Though nucleic acid-based methods such as RT-PCR are widely available, they require sample preparation and long processing time. PoC diagnostic devices provide relatively faster and stable results. However they require further investigation to provide high accuracy and be adaptable for the new variants. In this study, laser-scribed graphene (LSG) sensors are coupled with gold nanoparticles (AuNPs) as stable promising biosensing platforms. Angiotensin Converting Enzyme 2 (ACE2), an enzymatic receptor, is chosen to be the biorecognition unit due to its high binding affinity towards spike proteins as a key-lock model. The sensor was integrated to a homemade and portable potentistat device, wirelessly connected to a smartphone having a customized application for easy operation. LODs of 5.14 and 2.09 ng/mL was achieved for S1 and S2 protein in the linear range of 1.0–200 ng/mL, respectively. Clinical study has been conducted with nasopharyngeal swabs from 63 patients having alpha (B.1.1.7), beta (B.1.351), delta (B.1.617.2) variants, patients without mutation and negative patients. A machine learning model was developed with accuracy of 99.37% for the identification of the SARS-Cov-2 variants under 1 min. With the increasing need for rapid and improved disease diagnosis and monitoring, the PoC platform proved its potential for real time monitoring by providing accurate and fast variant identification without any expertise and pre sample preparation, which is exactly what societies need in this time of pandemic.

1 January 2017 in Acta Clinica Croatica
Verified
Journal Article
Open access
PDF file
DHDuygu Harmancı
Duygu Harmancı
ZEZubeyde Erbayraktar
Zubeyde Erbayraktar
OSOya Sayin
Oya Sayin
GGGul Akdogan Guner
Gul Akdogan Guner
Glioblastoma multiforme (GBM) is caused by the central nervous system-derived glial cells, and represents the most common (50%-60%) form of primary brain tumors. The aim of this study was to investigate the in vitro effects of selenium...