One important challenge facing the urbanization and global environmental change community is to understand the relation between urban form, energy use and carbon emissions. Missing from the current literature are scientific assessments that evaluate the impacts of different urban spatial units on energy fluxes; yet, this type of analysis is needed by urban planners, who recognize that local scale zoning affects energy consumption and local climate. Satellite-based estimation of urban energy fluxes at neighbourhood scale is still a challenge. Here we show the potential of the current satellite missions to retrieve urban energy budget fluxes, supported by meteorological observations and evaluated by direct flux measurements. We found an agreement within 5% between satellite and in-situ derived net all-wave radiation; and identified that wall facet fraction and urban materials type are the most important parameters for estimating heat storage of the urban canopy. The satellite approaches were found to underestimate measured turbulent heat fluxes, with sensible heat flux being most sensitive to surface temperature variation (−64.1, +69.3 W m⁻² for ±2 K perturbation). They also underestimate anthropogenic heat fluxes. However, reasonable spatial patterns are obtained for the latter allowing hot-spots to be identified, therefore supporting both urban planning and urban climate modelling.

Achieving climate neutrality by 2050 requires ground-breaking technological and methodological advancements in climate change mitigation planning and actions from local to regional scales. Monitoring the cities' CO₂ emissions with sufficient detail and accuracy is crucial for guiding sustainable urban transformation. Current methodologies for CO₂ emission inventories rely on bottom-up (BU) approaches which do not usually offer information on the spatial or temporal variability of the emissions and present substantial uncertainties. This study develops a novel approach which assimilates direct CO₂ flux observations from urban eddy covariance (EC) towers with very high spatiotemporal resolution information from an advanced urban BU surface flux model (Part 1 of this study, Stagakis et al., 2023) within a Bayesian inversion framework. The methodology is applied to the city centre of Basel, Switzerland (3 × 3 km domain), taking advantage of two long-term urban EC sites located 1.6 km apart. The data assimilation provides optimised gridded CO₂ flux information individually for each urban surface flux component (i.e. building heating emissions, commercial/industrial emissions, traffic emissions, human respiration emissions, biogenic net exchange) at 20 m resolution and weekly time-step. The results demonstrate that urban EC observations can be consistently used to improve high-resolution BU surface CO₂ flux model estimations, providing realistic seasonal variabilities of each flux component. Traffic emissions are determined with the greatest confidence among the five flux components during the inversions. The optimised annual anthropogenic emissions are 14.7 % lower than the prior estimate, the human respiration emissions have decreased by 12.1 %, while the biogenic components transformed from a weak sink to a weak source. The root-mean-square errors (RMSEs) of the weekly comparisons between EC observations and model outputs are consistently reduced. However, a slight underestimation of the total flux, especially in locations with complex CO₂ source/sink mixture, is still evident in the optimised fluxes.