Shreyas Vasanawala

Dr. Shreyas Vasanawala

orcid

Research Focus & Metrics

Academic Career Length

33Years (1994-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
6 May 2013 in Magnetic Resonance in Medicine
Verified
Journal Article
Open access
PDF file
MUMartin Uecker
Martin Uecker
PLPeng Lai
Peng Lai
MMMark J. Murphy
Mark J. Murphy
PVPatrick Virtue
Patrick Virtue
MEMichael Elad
Michael Elad
MLMichael Lustig
Michael Lustig
Purpose: Parallel imaging allows the reconstruction of images from undersampled multicoil data. The two main approaches are: SENSE, which explicitly uses coil sensitivities, and GRAPPA, which makes use of learned correlations in k‐space. The purpose of this work is to clarify their relationship and to develop and evaluate an improved algorithm.Theory and Methods: A theoretical analysis shows: (1) The correlations in k‐space are encoded in the null space of a calibration matrix. (2) Both approaches restrict the solution to a subspace spanned by the sensitivities. (3) The sensitivities appear as the main eigenvector of a reconstruction operator computed from the null space. The basic assumptions and the quality of the sensitivity maps are evaluated in experimental examples. The appearance of additional eigenvectors motivates an extended SENSE reconstruction with multiple maps, which is compared to existing methods.Results: The existence of a null space and the high quality of the extracted sensitivities are confirmed. The extended reconstruction combines all advantages of SENSE with robustness to certain errors similar to GRAPPA.Conclusion: In this article the gap between both approaches is finally bridged. A new autocalibration technique combines the benefits of both. Magn Reson Med 71:990–1001, 2014. © 2013 Wiley Periodicals, Inc.

8 September 2019 in Aging Cell
Verified
Journal Article
Open access
PDF file
GFGregory M. Fahy
Gregory M. Fahy
RBRobert T. Brooke
Robert T. Brooke
JWJames P. Watson
James P. Watson
ZGZinaida Good
Zinaida Good
SVShreyas Vasanawala
Shreyas Vasanawala
SHSteve Horvath
Steve Horvath
Epigenetic “clocks” can now surpass chronological age in accuracy for estimating biological age. Here, we use four such age estimators to show that epigenetic aging can be reversed in humans. Using a protocol intended to regenerate the thymus, we observed protective immunological changes, improved risk indices for many age‐related diseases, and a mean epigenetic age approximately 1.5 years less than baseline after 1 year of treatment (−2.5‐year change compared to no treatment at the end of the study). The rate of epigenetic aging reversal relative to chronological age accelerated from −1.6 year/year from 0–9 month to −6.5 year/year from 9–12 month. The GrimAge predictor of human morbidity and mortality showed a 2‐year decrease in epigenetic vs. chronological age that persisted six months after discontinuing treatment. This is to our knowledge the first report of an increase, based on an epigenetic age estimator, in predicted human lifespan by means of a currently accessible aging intervention.

9 April 2012 in Magnetic Resonance in Medicine
Verified
Journal Article
Open access
PDF file
TZTao Zhang
Tao Zhang
JPJohn M. Pauly
John M. Pauly
SVShreyas Vasanawala
Shreyas Vasanawala
MLMichael Lustig
Michael Lustig
MRI using receiver arrays with many coil elements can provide high signal‐to‐noise ratio and increase parallel imaging acceleration. At the same time, the growing number of elements results in larger datasets and more computation in the reconstruction. This is of particular concern in 3D acquisitions and in iterative reconstructions. Coil compression algorithms are effective in mitigating this problem by compressing data from many channels into fewer virtual coils. In Cartesian sampling there often are fully sampledk‐space dimensions. In this work, a new coil compression technique for Cartesian sampling is presented that exploits the spatially varying coil sensitivities in these nonsubsampled dimensions for better compression and computation reduction. Instead of directly compressing ink‐space, coil compression is performed separately for each spatial location along the fully sampled directions, followed by an additional alignment process that guarantees the smoothness of the virtual coil sensitivities. This important step provides compatibility with autocalibrating parallel imaging techniques. Its performance is not susceptible to artifacts caused by a tight imaging field‐of‐view. High quality compression of in vivo 3D data from a 32 channel pediatric coil into six virtual coils is demonstrated. Magn Reson Med, 2013.

15 February 2012 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
MMMark Murphy
Mark Murphy
MAMarcus Alley
Marcus Alley
JDJames Demmel
James Demmel
KKKurt Keutzer
Kurt Keutzer
SVShreyas Vasanawala
Shreyas Vasanawala
MLMichael Lustig
Michael Lustig
We present l 1 -SPIRiT, a simple algorithm for auto calibrating parallel imaging (acPI) and compressed sensing (CS) that permits an efficient implementation with clinically-feasible runtimes. We propose a CS objective function that minimizes cross-channel joint sparsity in the wavelet domain. Our reconstruction minimizes this objective via iterative soft-thresholding, and integrates naturally with iterative self-consistent parallel imaging (SPIRiT). Like many iterative magnetic resonance imaging reconstructions, l 1 -SPIRiT's image quality comes at a high computational cost. Excessively long runtimes are a barrier to the clinical use of any reconstruction approach, and thus we discuss our approach to efficiently parallelizing l 1 -SPIRiT and to achieving clinically-feasible runtimes. We present parallelizations of l 1 -SPIRiT for both multi-GPU systems and multi-core CPUs, and discuss the software optimization and parallelization decisions made in our implementation. The performance of these alternatives depends on the processor architecture, the size of the image matrix, and the number of parallel imaging channels. Fundamentally, achieving fast runtime requires the correct trade-off between cache usage and parallelization overheads. We demonstrate image quality via a case from our clinical experimentation, using a custom 3DFT spoiled gradient echo (SPGR) sequence with up to 8× acceleration via Poisson-disc undersampling in the two phase-encoded directions.

1 August 2010 in Radiology
Verified
Journal Article
Closed access
SVShreyas Vasanawala
Shreyas Vasanawala
MAMarcus T. Alley
Marcus T. Alley
BHBrian A. Hargreaves
Brian A. Hargreaves
RBRichard A. Barth
Richard A. Barth
JPJohn M. Pauly
John M. Pauly
MLMichael Lustig
Michael Lustig
We used a combination of parallel imaging and compressed sensing to generate images at acceleration factors that were more than double those used in our standard clinical practice. PurposeTo develop a method that combines parallel imaging and compressed sensing to enable faster and/or higher spatial resolution magnetic resonance (MR) imaging and show its feasibility in a pedi...

20 January 2016 in Magnetic Resonance in Medicine
Verified
Journal Article
Closed access
PDF file
JTJonathan Tamir
Jonathan Tamir
MUMartin Uecker
Martin Uecker
WCWeitian Chen
Weitian Chen
PLPeng Lai
Peng Lai
MAMarcus T. Alley
Marcus T. Alley
MLMichael Lustig
Michael Lustig