Tolga Izgu

Dr. Tolga Izgu

National Research Council of Italy (CNR), IBE/Institute Of Bioeconomy, Florence, Tuscany, Italy
orcid

Research Focus & Metrics

Academic Career Length

2Years (2025-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 April 2024 in Sustainability
Verified
Journal Article
Open access
PDF file
DDDicle Dönmez
Dicle Dönmez
Musab A. IsakMusab A. Isak
Musab A. Isak
Tolga IzguTolga Izgu
Tolga Izgu
Özhan ŞimşekÖzhan Şimşek
Özhan Şimşek
Sustainable agriculture seeks to balance human nutritional needs with the preservation of environmental quality and the economic viability of agricultural systems. Principles of resource conservation, economic resilience, social equity, and competitiveness underpin this approach. Despite its potential to address crucial issues like food security, energy sustainability, and environmental stewardship, sustainable agriculture faces challenges. These include the scalability of its practices, potential economic constraints in the short term, and the need for significant shifts in policy and consumer behavior. A more explicit definition could encapsulate sustainable agriculture as integrating innovative practices that are environmentally benign, economically feasible, and socially equitable. This encompasses practices that reduce water scarcity, combat soil degradation, and address climate change impacts—crucial steps toward a robust and future-proof agricultural system. By acknowledging these challenges and specifying issues like water scarcity, soil health, and climate change, this abstract presents a balanced view of sustainable agriculture’s role in a sustainable future, highlighting its necessity and the urgent need for integrated efforts to overcome its implementation barriers.

4 March 2024 in Plants
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Journal Article
Open access
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Özhan ŞimşekÖzhan Şimşek
Özhan Şimşek
Musab A. IsakMusab A. Isak
Musab A. Isak
DDDicle Dönmez
Dicle Dönmez
AŞakife dalda şekerci
akife dalda şekerci
Tolga IzguTolga Izgu
Tolga Izgu
YKYıldız Aka Kaçar
Yıldız Aka Kaçar
This comprehensive article critically analyzes the advanced biotechnological strategies to mitigate plant drought stress. It encompasses an in-depth exploration of the latest developments in plant genomics, proteomics, and metabolomics, shedding light on the complex molecular mechanisms that plants employ to combat drought stress. The study also emphasizes the significant advancements in genetic engineering techniques, particularly CRISPR-Cas9 genome editing, which have revolutionized the creation of drought-resistant crop varieties. Furthermore, the article explores microbial biotechnology’s pivotal role, such as plant growth-promoting rhizobacteria (PGPR) and mycorrhizae, in enhancing plant resilience against drought conditions. The integration of these cutting-edge biotechnological interventions with traditional breeding methods is presented as a holistic approach for fortifying crops against drought stress. This integration addresses immediate agricultural needs and contributes significantly to sustainable agriculture, ensuring food security in the face of escalating climate change challenges.

22 November 2022 in Plants
Verified
Journal Article
Open access
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Carla BenelliCarla Benelli
Carla Benelli
Waed TarrafWaed Tarraf
Waed Tarraf
Tolga IzguTolga Izgu
Tolga Izgu
ACAnna De Carlo
Anna De Carlo
Plant genetic resources conservation may be a potential option for the improvement of agricultural crops through modern biotechnologies, and in vitro conservation is a tool available to safeguard plant biodiversity. Ex situ conservation of plant genetic resources using the in vitro procedures is in progress in many countries. The slow growth storage (SGS) technique is a valid in vitro approach to preserve several vegetatively propagated species by controlling the growth and development of plantlets, economizing storage space and labor and reducing costs. Moreover, SGS prolongs the timing between subcultures, lowers the risk of losing germplasm through handling errors, such as contamination problems, and decreases the risk of genetic instability due to the reduction in the number of subcultures. SGS is applied by considering different factors: temperature, light or darkness conditions, medium composition, including mineral or sucrose concentrations, and the presence/absence of plant growth regulators, osmotic agents and growth inhibitors. SGS protocols for some fruit species have been well defined, others require additional research. The present review focuses on the effect of several factors that influence the SGS of in vitro shoots derived from temperate and tropical fruit species during the last ten years.

4 January 2024 in Horticulturae
Verified
Journal Article
Open access
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Özhan ŞimşekÖzhan Şimşek
Özhan Şimşek
AŞakife dalda şekerci
akife dalda şekerci
Musab A. IsakMusab A. Isak
Musab A. Isak
FBFatma Bulut
Fatma Bulut
Tolga IzguTolga Izgu
Tolga Izgu
DDDicle Dönmez
Dicle Dönmez
This study comprehensively explored the micropropagation and rooting capabilities of four distinct lavender genotypes, utilizing culture media with and without 2 g/L of activated charcoal. A systematic examination of varying concentrations of BAP for micropropagation and IBA for rooting identified an optimal concentration of 1 mg/L for both BAP and IBA, resulting in excellent outcomes. Following robust root development, the acclimatization of plants to external conditions achieved a 100% survival rate across all genotypes. In addition to the conventional techniques employed, integrating machine learning (ML) methodologies holds promise for further enhancing the efficiency of lavender propagation protocols. Using cutting-edge computational tools, including MLP, RBF, XGBoost, and GP algorithms, our findings were rigorously examined and forecast using three performance measures (RMSE, R2, and MAE). Notably, the comparative evaluation of different machine learning models revealed distinct R2 rates for plant characteristics, with MLP, RBF, XGBoost, and GP demonstrating varying degrees of effectiveness. Future studies may leverage ML models, such as XGBoost, MLP, RBF, and GP, to fine-tune specific variables, including culture media composition and growth regulator treatments. The adaptability and ability of ML techniques to analyze complex biological processes can provide valuable insights into optimizing lavender micropropagation on a broader scale. This collaborative approach, combining traditional in vitro techniques with machine learning, validates the success of current micropropagation and rooting protocols and paves the way for continuous improvement. By embracing ML in lavender propagation studies, researchers can contribute to advancing sustainable and efficient plant propagation techniques, thereby fostering the preservation and exploitation of genetic resources for conservation and agriculture.

30 April 2024 in Horticulturae
Verified
Journal Article
Open access
PDF file
Waed TarrafWaed Tarraf
Waed Tarraf
Tolga IzguTolga Izgu
Tolga Izgu
Özhan ŞimşekÖzhan Şimşek
Özhan Şimşek
NCnunzia.cicco Cicco
nunzia.cicco Cicco
Carla BenelliCarla Benelli
Carla Benelli
The propagation of Crocus sativus L. relies exclusively on corm multiplication. As underground storage organs, corms are susceptible to a wide range of pathogens, environmental stresses, and diseases, making traditional propagation methods often ineffective with the loss of valuable material. In vitro propagation offers an alternative for the saffron culture under controlled conditions. In particular, the innovative application of the Temporary Immersion System (TIS) represents a technological advancement for enhancing biomass production with a reduction in operational costs. The current study utilized the Plantform™ bioreactor to propagate in vitro saffron corms from the ‘Abruzzo’ region (Italy), integrating machine learning models to assess its performance. The evaluation of saffron explants after 30, 60, and 90 days of culture showed a marked improvement in growth and microcorm production compared to conventional in vitro culture on semisolid medium, supported by the machine learning analysis. Indeed, the Random Forest algorithm revealed a predictive accuracy with an R2 value of 0.81 for microcorm number, showcasing the capability of machine learning models to forecast propagation outcomes effectively. These results confirm that applying TIS in saffron culture could lead to economically viable, large biomass production within a controlled environment, irrespective of seasonality. This study represents the first endeavor to use TIS technology to enhance the in vitro propagation of saffron in conjunction with machine learning, suggesting an innovative approach for cultivating high-value crops like saffron.

13 June 2024 in PLOS ONE
Verified
Journal Article
Open access
PDF file
Musab A. IsakMusab A. Isak
Musab A. Isak
Taner BozkurtTaner Bozkurt
Taner Bozkurt
MTMehmet TÜTÜNCÜ
Mehmet TÜTÜNCÜ
DDDicle Dönmez
Dicle Dönmez
Tolga IzguTolga Izgu
Tolga Izgu
Özhan ŞimşekÖzhan Şimşek
Özhan Şimşek
This study investigates the influence of cadmium (Cd) stress on the micropropagation of Goji Berry (Lycium barbarum L.) across three distinct genotypes (ERU, NQ1, NQ7), employing an array of machine learning (ML) algorithms, including Multilayer Perceptron (MLP), Support Vector Machines (SVM), Random Forest (RF), Gaussian Process (GP), and Extreme Gradient Boosting (XGBoost). The primary motivation is to elucidate genotype-specific responses to Cd stress, which poses significant challenges to agricultural productivity and food safety due to its toxicity. By analyzing the impacts of varying Cd concentrations on plant growth parameters such as proliferation, shoot and root lengths, and root numbers, we aim to develop predictive models that can optimize plant growth under adverse conditions. The ML models revealed complex relationships between Cd exposure and plant physiological changes, with MLP and RF models showing remarkable prediction accuracy (R2 values up to 0.98). Our findings contribute to understanding plant responses to heavy metal stress and offer practical applications in mitigating such stress in plants, demonstrating the potential of ML approaches in advancing plant tissue culture research and sustainable agricultural practices.