Tong Ye

Dr. Tong Ye

1. Clemson-MUSC Joint Bioengineering Program, Department of Bioengineering, Clemson University, Clemson, SC, USA
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Research Focus & Metrics

Academic Career Length

30Years (1997-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 April 2020 in Nature Biomedical Engineering
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DRDylan J. Richards
Dylan J. Richards
YLYang Li
Yang Li
CKCharles Kerr
Charles Kerr
JYJenny Yao
Jenny Yao
GBGyda C. Beeson
Gyda C. Beeson
YMYing Mei
Ying Mei

23 January 2013 in Scientific Reports
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Journal Article
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DDDan Dan
Dan Dan
MLMing Lei
Ming Lei
Baoli YaoBaoli Yao
Baoli Yao
WWWen Wang
Wen Wang
MWMartin Winterhalder
Martin Winterhalder
WZWei Zhao
Wei Zhao
Super-resolution three-dimensional (3D) optical microscopy has incomparable advantages over other high-resolution microscopic technologies, such as electron microscopy and atomic force microscopy, in the study of biological molecules, pathways and events in live cells and tissues. We present a novel approach of structured illumination microscopy (SIM) by using a digital micromirror device (DMD) for fringe projection and a low-coherence LED light for illumination. The lateral resolution of 90 nm and the optical sectioning depth of 120 μm were achieved. The maximum acquisition speed for 3D imaging in the optical sectioning mode was 1.6×107 pixels/second, which was mainly limited by the sensitivity and speed of the CCD camera. In contrast to other SIM techniques, the DMD-based LED-illumination SIM is cost-effective, ease of multi-wavelength switchable and speckle-noise-free. The 2D super-resolution and 3D optical sectioning modalities can be easily switched and applied to either fluorescent or non-fluorescent specimens.

25 July 2013 in Human Molecular Genetics
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KFKyle B. Fraser
Kyle B. Fraser
MMMark S. Moehle
Mark S. Moehle
JDJoão P.L. Daher
João P.L. Daher
PWPhilip J. Webber
Philip J. Webber
JWJeri Y. Williams
Jeri Y. Williams
AWAndrew B. West
Andrew B. West
Mutations in the leucine-rich repeat kinase 2 (LRRK2) gene cause late-onset Parkinson's disease (PD). Emerging evidence suggests a role for LRRK2 in the endocytic pathway. Here, we show that LRRK2 is released in extracellular microvesicles (i.e. exosomes) from cells that natively express LRRK2. LRRK2 localizes to collecting duct epithelial cells in the kidney that actively secrete exosomes into urine. Purified urinary exosomes contain LRRK2 protein that is both dimerized and phosphorylated. We provide a quantitative proteomic profile of 1673 proteins in urinary exosomes and find that known LRRK2 interactors including 14-3-3 are some of the most abundant exosome proteins. Disruption of the 14-3-3 LRRK2 interaction with a 14-3-3 inhibitor or through acute LRRK2 kinase inhibition potently blocks LRRK2 release in exosomes, but familial mutations in LRRK2 had no effect on secretion. LRRK2 levels were overall comparable but highly variable in urinary exosomes derived from PD cases and age-matched controls, although very high LRRK2 levels were detected in some PD affected cases. We further characterized LRRK2 exosome release in neurons and macrophages in culture, and found that LRRK2-positive exosomes circulate in cerebral spinal fluid (CSF). Together, these results define a pathway for LRRK2 extracellular release, clarify one function of the LRRK2 14-3-3 interaction and provide a foundation for utilization of LRRK2 as a biomarker in clinical trials.

1 January 2007 in Journal of Biomedical Optics
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DFDan Fu
Dan Fu
Tong YeTong Ye
Tong Ye
TMThomas E. Matthews
Thomas E. Matthews
GYGunay Yurtsever
Gunay Yurtsever
WWWarren S. Warren
Warren S. Warren
We develop a new approach in imaging nonfluorescent species with two-color two-photon and excited state absorption microscopy. If one of two synchronized mode-locked pulse trains at different colors is intensity modulated, the modulation transfers to the other pulse train when nonlinear absorption takes places in the medium. We can easily measure 10−6 absorption changes caused by either two-photon absorption or excited-state absorption with a RF lock-in amplifier. Sepia melanin is studied in detail as a model system. Spectroscopy studies on the instantaneous two-photon absorption (TPA) and the relatively long-lived excited-state absorption (ESA) of melanin are carried out in solution, and imaging capability is demonstrated in B16 cells. It is found that sepia melanin exhibits two distinct excited states with different lifetimes (one at 3ps, one lasting hundreds of nanoseconds) when pumped at 775nm. Its characteristic TPA/ESA enables us to image its distribution in cell samples with high resolution comparable to two-photon fluorescence microscopy (TPFM). This new technique could potentially provide valuable information in diagnosing melanoma.

21 November 2013 in The FASEB Journal
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SKSuman Karki
Suman Karki
RSRanu Surolia
Ranu Surolia
THThomas David Hock
Thomas David Hock
PGPurusotham Guroji
Purusotham Guroji
JZJason S. Zolak
Jason S. Zolak
VAVeena Antony
Veena Antony
Pleural mesothelial cells (PMCs), which are derived from the mesoderm, exhibit an extraordinary capacity to undergo phenotypic changes during development and disease. PMC transformation and trafficking has a newly defined role in idiopathic pulmonary fibrosis (IPF); however, the contribution of Wilms' tumor 1 (Wt1)‐positive PMCs to the generation of pathognomonic myofibroblasts remains unclear. PMCs were obtained from IPF lung explants and healthy donor lungs that were not used for transplantation. Short hairpin Wt1‐knockdown PMCs (sh Wt1) were generated with Wt1 shRNA, and morphologic and functional assays were performed in vitro. Loss of Wt1 abrogated the PMC phenotype and showed evidence of mesothelial‐to‐mesenchymal transition (MMT), with a reduced expression of E‐cadherin and an increase in the profibrotic markers α‐smooth muscle actin (α‐SMA) and fibronectin, along with increased migration and contractility, compared with that of the control. Migration of PMCs in response to active transforming growth factor (TGF)‐β1 was assessed by live‐cell imaging with 2‐photon microscopy and 3D imaging, of Wt1‐EGFP transgenic mice. Lineage‐tracing experiments to map the fate of Wt1 + PMCs in mouse lung in response to TGF‐β1 were also performed by using a Cre‐loxP system. Our results, for the first time, demonstrate that Wt1 is necessary for the morphologic integrity of pleural membrane and that loss of Wt1 contributes to IPF via MMT of PMCs into a myofibroblast phenotype.—Karki, S., Surolia, R., Hock, T. D., Guroji, P., Zolak, J. S., Duggal, R., Ye, T., Thannickal, V. J., Antony, V. B. Wilms' tumor 1 (Wt1) regulates pleural mesothelial cell plasticity and transition into myofibroblasts in idiopathic pulmonary fibrosis. FASEB J. 28, 1122–1131 (2014). www.fasebj.org

4 September 2007 in Optics Letters
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DFDan Fu
Dan Fu
Tong YeTong Ye
Tong Ye
TMThomas E. Matthews
Thomas E. Matthews
BCBenny J. Chen
Benny J. Chen
GYGunay Yurtserver
Gunay Yurtserver
WWWarren S. Warren
Warren S. Warren
We demonstrate that both oxyhemoglobin and deoxyhemoglobin have sequential two-color, two-photon absorption properties that can serve as endogenous contrasts in microvasculature imaging. Using a sensitive modulation transfer technique, we are able to image hemoglobin in red blood cells with micrometer resolution, both in vitro and in vivo. We show that excellent contrast from hemoglobin without any labeling can be obtained in tissue.