Kristina Sonnabend

Dr. Kristina Sonnabend


Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 January 2023 in Diagnostics
Verified
Journal Article
Open access
PDF file
PFPhilipp Fervers
Philipp Fervers
CZCharlotte Zaeske
Charlotte Zaeske
PRPhilip Rauen
Philip Rauen
AIAndra-Iza Iuga
Andra-Iza Iuga
JKJonathan Kottlors
Jonathan Kottlors
GBGrischa Bratke
Grischa Bratke
Compressed sensing accelerates magnetic resonance imaging (MRI) acquisition by undersampling of the k-space. Yet, excessive undersampling impairs image quality when using conventional reconstruction techniques. Deep-learning-based reconstruction methods might allow for stronger undersampling and thus faster MRI scans without loss of crucial image quality. We compared imaging approaches using parallel imaging (SENSE), a combination of parallel imaging and compressed sensing (COMPRESSED SENSE, CS), and a combination of CS and a deep-learning-based reconstruction (CS AI) on raw k-space data acquired at different undersampling factors. 3D T2-weighted images of the lumbar spine were obtained from 20 volunteers, including a 3D sequence (standard SENSE), as provided by the manufacturer, as well as accelerated 3D sequences (undersampling factors 4.5, 8, and 11) reconstructed with CS and CS AI. Subjective rating was performed using a 5-point Likert scale to evaluate anatomical structures and overall image impression. Objective rating was performed using apparent signal-to-noise and contrast-to-noise ratio (aSNR and aCNR) as well as root mean square error (RMSE) and structural-similarity index (SSIM). The CS AI 4.5 sequence was subjectively rated better than the standard in several categories and deep-learning-based reconstructions were subjectively rated better than conventional reconstructions in several categories for acceleration factors 8 and 11. In the objective rating, only aSNR of the bone showed a significant tendency towards better results of the deep-learning-based reconstructions. We conclude that CS in combination with deep-learning-based image reconstruction allows for stronger undersampling of k-space data without loss of image quality, and thus has potential for further scan time reduction.

1 June 2023 in British Journal of Radiology
Verified
Journal Article
Open access
AIAndra-Iza Iuga
Andra-Iza Iuga
PRPhilip Santiago Rauen
Philip Santiago Rauen
FSFlorian Siedek
Florian Siedek
NHNils Grosse Hokamp
Nils Grosse Hokamp
KSKristina Sonnabend
Kristina Sonnabend
GBGrischa Bratke
Grischa Bratke
Objectives: To evaluate the feasibility of combining compressed sense (CS) with a newly developed deep learning-based algorithm (CS-AI) using convolutional neural networks to accelerate 2D MRI of the knee. Methods: In this prospective study, 20 healthy volunteers were scanned with a 3T MRI scanner. All subjects received a fat-saturated sagittal 2D proton density reference sequence without acceleration and four additional acquisitions with different acceleration levels: 2, 3, 4 and 6. All sequences were reconstructed with the conventional CS and a new CS-AI algorithm. Two independent, blinded readers rated all images by seven criteria (overall image impression, visible artifacts, delineation of anterior ligament, posterior ligament, menisci, cartilage, and bone) using a 5-point Likert scale. Signal- and contrast-to-noise ratios were calculated. Subjective ratings and quantitative metrics were compared between CS and CS-AI with similar acceleration levels and between all CS/CS-AI images and the non-accelerated reference sequence. Friedman and Dunn´s multiple comparison tests were used for subjective, ANOVA and the Tukey Kramer test for quantitative metrics. Results: Conventional CS images at the lowest acceleration level (CS2) were already rated significantly lower than reference for 6/7 criteria. CS-AI images maintained similar image quality to the reference up to CS-AI three for all criteria, which would allow for a reduction in scan time of 64% with unchanged image quality compared to the unaccelerated sequence. SNR and CNR were significantly higher for all CS-AI reconstructions compared to CS (all p < 0.05). Conclusions: AI-based image reconstruction showed higher image quality than CS for 2D knee imaging. Its implementation in the clinical routine yields the potential for faster MRI acquisition but needs further validation in non-healthy study subjects. Advances in knowledge: Combining compressed SENSE with a newly developed deep learning-based algorithm using convolutional neural networks allows a 64% reduction in scan time for 2D imaging of the knee. Implementation of the new deep learning-based algorithm in clinical routine in near future should enable better image quality/resolution with constant scan time, or reduced acquisition times while maintaining diagnostic quality.

9 March 2024 in European Journal of Radiology
Verified
Journal Article
Open access
RTRobert Terzis
Robert Terzis
TDThomas Dratsch
Thomas Dratsch
RHRobert Hahnfeldt
Robert Hahnfeldt
LBLajos Maximilian Basten
Lajos Maximilian Basten
PRPhilip Rauen
Philip Rauen
GBGrischa Bratke
Grischa Bratke
To investigate the potential of combining Compressed Sensing (CS) and a newly developed AI-based super resolution reconstruction prototype consisting of a series of convolutional neural networks (CNN) for a complete five-minute 2D knee MRI protocol. In this prospective study, 20 volunteers were examined using a 3T-MRI-scanner (Ingenia Elition X, Philips). Similar to clinical practice, the protocol consists of a fat-saturated 2D-proton-density-sequence in coronal, sagittal and transversal orientation as well as a sagittal T1-weighted sequence. The sequences were acquired with two different resolutions (standard and low resolution) and the raw data reconstructed with two different reconstruction algorithms: a conventional Compressed SENSE (CS) and a new CNN-based algorithm for denoising and subsequently to interpolate and therewith increase the sharpness of the image (CS-SuperRes). Subjective image quality was evaluated by two blinded radiologists reviewing 8 criteria on a 5-point Likert scale and signal-to-noise ratio calculated as an objective parameter. The protocol reconstructed with CS-SuperRes received higher ratings than the time-equivalent CS reconstructions, statistically significant especially for low resolution acquisitions (e.g., overall image impression: 4.3 ± 0.4 vs. 3.4 ± 0.4, p < 0.05). CS-SuperRes reconstructions for the low resolution acquisition were comparable to traditional CS reconstructions with standard resolution for all parameters, achieving a scan time reduction from 11:01 min to 4:46 min (57 %) for the complete protocol (e.g. overall image impression: 4.3 ± 0.4 vs. 4.0 ± 0.5, p < 0.05). The newly-developed AI-based reconstruction algorithm CS-SuperRes allows to reduce scan time by 57% while maintaining unchanged image quality compared to the conventional CS reconstruction.

15 September 2020 in Investigative Radiology
Verified
Journal Article
Closed access
DZDavid Zopfs
David Zopfs
RRRobert Peter Reimer
Robert Peter Reimer
KSKristina Sonnabend
Kristina Sonnabend
MRMiriam Rinneburger
Miriam Rinneburger
CHClemens M. Dipl Ing Hentschke
Clemens M. Dipl Ing Hentschke
NHNils Grosse Hokamp
Nils Grosse Hokamp
Objectives: Dual-energy computed tomography (DECT)–derived quantification of iodine concentration (IC) is increasingly used in oncologic imaging to characterize lesions and evaluate treatment response. However, only limited data are available on intraindividual consistency of IC and its variation. This study investigates the longitudinal reproducibility of IC in organs, vessels, and lymph nodes in a large cohort of healthy patients who underwent repetitive DECT imaging. Materials and Methods: A total of 159 patients, who underwent a total of 469 repetitive (range, 2–4), clinically indicated portal-venous phase DECT examinations of the chest and abdomen, were retrospectively included. At time of imaging, macroscopic tumor burden was excluded by follow-up imaging (≥3 months). Iodine concentration was measured region of interest-based (N = 43) in parenchymatous organs, vessels, lymph nodes, and connective tissue. Normalization of IC to the aorta and to the trigger delay as obtained from bolus tracking was performed. For statistical analysis, intraclass correlation coefficient and modified variation coefficient (MVC) were used to assess intraindividual agreement of IC and its variation between different time points, respectively. Furthermore, t tests and analysis of variance with Tukey-Kramer post hoc test were used. Results: The mean intraclass correlation coefficient over all regions of interest was good to excellent (0.642–0.936), irrespective of application of normalization or the normalization technique. Overall, MVC ranged from 1.8% to 25.4%, with significantly lower MVC in data normalized to the aorta (5.8% [1.8%–15.8%]) in comparison with the MVC of not normalized data and data normalized to the trigger delay (P < 0.01 and P = 0.04, respectively). Conclusions: Our study confirms intraindividual, longitudinal variation of DECT-derived IC, which varies among vessels, lymph nodes, organs, and connective tissue, following different perfusion characteristics; normalizing to the aorta seems to improve reproducibility when using a constant contrast media injection protocol.

16 July 2020 in Fluids and Barriers of the CNS
Verified
Journal Article
Open access
PDF file
EJElena Jaeger
Elena Jaeger
KSKristina Sonnabend
Kristina Sonnabend
FSFrank Schaarschmidt
Frank Schaarschmidt
DMDavid Maintz
David Maintz
KWKilian Weiss
Kilian Weiss
ABAlexander C. Bunck
Alexander C. Bunck
Background: 4D flow magnetic resonance imaging (MRI) of CSF can make an important contribution to the understanding of hydrodynamic changes in various neurological diseases but remains limited in clinical application due to long acquisition times. The aim of this study was to evaluate the accuracy of compressed SENSE accelerated MRI measurements of the spinal CSF flow. Methods: In 20 healthy subjects 4D flow MRI of the CSF in the cervical spine was acquired using compressed sensitivity encoding [CSE, a combination of compressed sensing and parallel imaging (SENSE) provided by the manufacturer] with acceleration factors between 4 and 10. A conventional scan using SENSE was used as reference. Extracted parameters were peak velocity, absolute net flow, forward flow and backward flow. Bland–Altman analysis was performed to determine the scan-rescan reproducibility and the agreement between SENSE and compressed SENSE. Additionally, a time accumulated flow error was calculated. In one additional subject flow of the spinal canal at the level of the entire spinal cord was assessed. Results: Averaged acquisition times were 10:21 min (SENSE), 9:31 min (CSE4), 6:25 min (CSE6), 4:53 min (CSE8) and 3:51 min (CSE10). Acquisition of the CSF flow surrounding the entire spinal cord took 14:40 min. Bland–Altman analysis showed good agreement for peak velocity, but slight overestimations for absolute net flow, forward flow and backward flow (< 1 ml/min) in CSE4–8. Results of the accumulated flow error were similar for CSE4 to CSE8. Conclusion: A quantitative analysis of acceleration factors CSE4–10 showed that CSE with an acceleration factor up to 6 is feasible. This allows a scan time reduction of 40% and enables the acquisition and analysis of the CSF flow dynamics surrounding the entire spinal cord within a clinically acceptable scan time.

1 November 2020 in European Journal of Radiology
Verified
Journal Article
Closed access
RRRobert Peter Reimer
Robert Peter Reimer
JSJohannes Salem
Johannes Salem
MMMartin Merkt
Martin Merkt
KSKristina Sonnabend
Kristina Sonnabend
SLSimon Lennartz
Simon Lennartz
NHNils Grosse Hokamp
Nils Grosse Hokamp