Songtao Yuan

Songtao Yuan


Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
28 January 2024 in Medical Image Analysis
Verified
Journal Article
Closed access
MLMingchao Li
Mingchao Li
KHKun Huang
Kun Huang
QXQiuzhuo Xu
Qiuzhuo Xu
JYJiadong Yang
Jiadong Yang
YZYuhan Zhang
Yuhan Zhang
QCQiang Chen
Qiang Chen

4 May 2020 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
MLMingchao Li
Mingchao Li
YCYerui Chen
Yerui Chen
ZJZexuan Ji
Zexuan Ji
KXKeren Xie
Keren Xie
SYSongtao Yuan
Songtao Yuan
SLShuo Li
Shuo Li
We present an image projection network (IPN), which is a novel end-to-end architecture and can achieve 3D-to-2D image segmentation in optical coherence tomography angiography (OCTA) images. Our key insight is to build a projection learning module (PLM) which uses a unidirectional pooling layer to conduct effective features selection and dimension reduction concurrently. By combining multiple PLMs, the proposed network can input 3D OCTA data, and output 2D segmentation results such as retinal vessel segmentation. It provides a new idea for the quantification of retinal indicators: without retinal layer segmentation and without projection maps. We tested the performance of our network for two crucial retinal image segmentation issues: retinal vessel (RV) segmentation and foveal avascular zone (FAZ) segmentation. The experimental results on 316 OCTA volumes demonstrate that the IPN is an effective implementation of 3D-to-2D segmentation networks, and the uses of multi-modality information and volumetric information make IPN perform better than the baseline methods.

21 January 2022 in Diabetes
Verified
Journal Article
Open access
PDF file
ZHZizhong Hu
Zizhong Hu
XMXiying Mao
Xiying Mao
MCMingkang Chen
Mingkang Chen
XWXinjing Wu
Xinjing Wu
TZTianye Zhu
Tianye Zhu
Qinghuai LiuQinghuai Liu
Qinghuai Liu
Vitreous fibrovascular membranes (FVMs), the hallmark of proliferative diabetic retinopathy (PDR), cause retinal hemorrhage, detachment, and eventually blindness. However, little is known about the pathophysiology of FVM. In this study, we used single-cell RNA sequencing on surgically harvested PDR-FVMs and generated a comprehensive cell atlas of FVM. Eight cellular compositions were identified, with microglia as the major cell population. We identified a GPNMB+ subpopulation of microglia, which presented both profibrotic and fibrogenic properties. Pseudotime analysis further revealed the profibrotic microglia was uniquely differentiated from retina-resident microglia and expanded in the PDR setting. Ligand-receptor interactions between the profibrotic microglia and cytokines upregulated in PDR vitreous implicated the involvement of several pathways, including CCR5, IFNGR1, and CD44 signaling, in the microglial activation within the PDR microenvironment. Collectively, our description of the novel microglia phenotypes in PDR-FVM may offer new insight into the cellular and molecular mechanism underlying the pathogenesis of DR, as well as potential signaling pathways amenable to disease-specific intervention.

24 September 2024 in Journal of Experimental Medicine
Verified
Journal Article
Open access
QCQiuchen Cao
Qiuchen Cao
SYShige Yang
Shige Yang
XWXiaowei Wang
Xiaowei Wang
HSHuaiqing Sun
Huaiqing Sun
WCWeijie Chen
Weijie Chen
Qinghuai LiuQinghuai Liu
Qinghuai Liu
The eye is closely connected to the brain, providing a unique window to detect pathological changes in the brain. In this study, we discovered β-amyloid (Aβ) deposits along the ocular glymphatic system in patients with Alzheimer’s disease (AD) and 5×FAD transgenic mouse model. Interestingly, Aβ from the brain can flow into the eyes along the optic nerve through cerebrospinal fluid (CSF), causing retinal degeneration. Aβ is mainly observed in the optic nerve sheath, the neural axon, and the perivascular space, which might represent the critical steps of the Aβ transportation from the brain to the eyes. Aquaporin-4 facilitates the influx of Aβ in brain–eye transport and out-excretion of the retina, and its absence or loss of polarity exacerbates brain-derived Aβ induced damage and visual impairment. These results revealed brain-to-eye Aβ transport as a major contributor to AD retinopathy, highlighting a new therapeutic avenue in ocular and neurodegenerative disease.

12 March 2017 in Journal of Ophthalmology
Verified
Journal Article
Open access
PDF file
JLJia Li
Jia Li
YPYannis Mantas Paulus
Yannis Mantas Paulus
YSYuanlu Shuai
Yuanlu Shuai
WFWangyi Fang
Wangyi Fang
Qinghuai LiuQinghuai Liu
Qinghuai Liu
SYSongtao Yuan
Songtao Yuan
For years, branch retinal vein occlusion is still a controversial disease in many aspects. An increasing amount of data is available regarding classification, pathogenesis, risk factors, natural history, and therapy of branch retinal vein occlusion. Some of the conclusions may even change our impression of branch retinal vein occlusion. It will be beneficial for our doctors to get a deeper understanding of this disease and improve the treatment skills. The aims of this review is to collect the information above and report new ideas especially from the past a few years.

27 April 2024 in Nature Communications
Verified
Journal Article
Open access
PDF file
HZHengtian Zhu
Hengtian Zhu
HYHuan Yang
Huan Yang
SXSiqi Xu
Siqi Xu
YMYuanyuan Ma
Yuanyuan Ma
SZShugeng Zhu
Shugeng Zhu
Fei XuFei Xu
Fei Xu
Eye tracking techniques enable high-efficient, natural, and effortless human-machine interaction by detecting users’ eye movements and decoding their attention and intentions. Here, a miniature, imperceptible, and biocompatible smart contact lens is proposed for in situ eye tracking and wireless eye-machine interaction. Employing the frequency encoding strategy, the chip-free and battery-free lens successes in detecting eye movement and closure. Using a time-sequential eye tracking algorithm, the lens has a great angular accuracy of <0.5°, which is even less than the vision range of central fovea. Multiple eye-machine interaction applications, such as eye-drawing, Gluttonous Snake game, web interaction, pan-tilt-zoom camera control, and robot vehicle control, are demonstrated on the eye movement model and in vivo rabbit. Furthermore, comprehensive biocompatibility tests are implemented, demonstrating low cytotoxicity and low eye irritation. Thus, the contact lens is expected to enrich approaches of eye tracking techniques and promote the development of human-machine interaction technology.