fangyuan Yin

Dr. fangyuan Yin


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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25 September 2013 in Parasites & Vectors
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Journal Article
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FYfangyuan Yin
fangyuan Yin
RGRobin Gasser
Robin Gasser
FLFa-Cai Li
Fa-Cai Li
MBMin Bao
Min Bao
WHWei-Yi Huang
Wei-Yi Huang
MHMin Hu
Min Hu
Background: Haemonchus contortus (order Strongylida) is a common parasitic nematode infecting small ruminants and causing significant economic losses worldwide. Knowledge of genetic variation within and among H. contortus populations can provide a foundation for understanding transmission patterns, the spread of drug resistance alleles and might assist in the control of haemonchosis. Methods: 152 H. contortus individual adult worms were collected from seven different geographical regions in China. The second internal transcribed spacer (ITS-2) of the nuclear ribosomal DNA and mitochondrial nicotinamide dehydrogenase subunit 4 gene (nad 4) were amplified by polymerase chain reaction (PCR) and sequenced directly. The sequence variations and population genetic diversities were determined. Results: Nucleotide sequence analyses revealed 18 genotypes (ITS-2) and 142 haplotypes (nad 4) among the 152 worms, with nucleotide diversities of 2.6% and 0.027, respectively, consistent with previous reports from other countries, including Australia, Brazil, Germany, Italy, Malaysia, Sweden, the USA and Yemen. Population genetic analyses revealed that 92.4% of nucleotide variation was partitioned within populations; there was no genetic differentiation but a high gene flow among Chinese populations; some degree of genetic differentiation was inferred between some specimens from China and those from other countries. Conclusions: This is the first study of genetic variation within H. contortus in China. The results revealed high within-population variations, low genetic differentiation and high gene flow among different populations of H. contortus in China. The present results could have implications for studying the epidemiology and ecology of H. contortus in China.

15 November 2016 in Parasites & Vectors
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Journal Article
Open access
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FYfangyuan Yin
fangyuan Yin
RGRobin Gasser
Robin Gasser
FLFa-Cai Li
Fa-Cai Li
MBMin Bao
Min Bao
WHWei-Yi Huang
Wei-Yi Huang
MHMin Hu
Min Hu
Studying genetic variation within and among Haemonchus contortus populations can inform some aspects of this parasite’s population genetics and epidemiology. However, almost nothing is known about such variation in China. Adult males of H. contortus (n = 184) representing seven distinct populations in China were collected, and genetic variation within and among these populations was explored using eight distinct microsatellite markers. Genetic parameters, such as heterozygosity and inbreeding coefficient (F IS ) indicated that all eight microsatellites were highly polymorphic. Various analyses (AMOVA, F ST , phylogenetic, structure, mantel test and population dynamics) revealed high within-population variation, low population genetic differentiation and high gene flow for H. contortus in China. This study provides a first snapshot of the genetic substructuring of H. contortus populations in China using polymorphic markers, and might provide a starting point for assessing genetic changes over space and time during or following the implementation of particular treatment or control strategies, or changes as a consequence of environmental, management and climatic factors.

3 February 2016 in Parasites & Vectors
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Journal Article
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FLFa-Cai Li
Fa-Cai Li
RGRobin Gasser
Robin Gasser
JLJames B. Lok
James B. Lok
PKPasi Korhonen
Pasi Korhonen
LHLi He
Li He
MHMin Hu
Min Hu
Phosphoinositide-dependent protein kinase-1 (PDK-1), which functions downstream of phosphoinositide 3-kinase (AGE-1) and activates protein kinases of the AGC family, plays critical roles in regulating biology processes, such as metabolism, growth, development and survival. In the free-living nematode Caenorhabditis elegans, PDK-1 is a key component of the insulin-like signalling pathway, regulating the entry into and exit from dauer (arrested development). Although it is proposed that similar molecular mechanisms control the transition from the free-living to the parasitic stages of nematodes, nothing is known about PDK-1 in Haemonchus contortus, a socioeconomically important gastric nematode of ruminants. Here, we isolated and characterized the pdk-1 gene (Hc-pdk-1) and its inferred product (Hc-PDK-1) from H. contortus. Using in vitro and in vivo methods, we then studied the transcriptional profiles of Hc-pdk-1 and anatomical gene expression patterns of Hc-PDK-1 in different developmental stages of C. elegans. In silico analysis of Hc-PDK-1 displayed conserved functional domains, such as protein kinase and pleckstrin homology (PH) domains and two predicted phosphorylation sites (Thr226/Tyr229), which are crucial for the phosphorylation of downstream signalling. The Hc-pdk-1 gene is transcribed in all of the main developmental stages of H. contortus, with its highest transcription in the infective third-stage larvae (iL3) compared with other stages. Transgene constructs, in which respective promoters were fused to the coding sequence for green fluorescent protein (GFP), were used to transform C. elegans, and to localize and compare the expression of Hc-pdk-1 and Ce-pdk-1. The expression of GFP under the control of the Hc-pdk-1 promoter was localized to the intestine, and head and tail neurons, contrasting somewhat the profile for the C. elegans ortholog, which is expressed in pharynx, intestine and head and tail neurons. This is the first characterization of pdk-1/PDK-1 from a trichostrongyloid nematode. Taken together, the findings from this study provide a first glimpse of the involvement of Hc-pdk-1 in the insulin-like signalling pathway in H. contortus.

8 November 2022 in Animals
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Journal Article
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FYfangyuan Yin
fangyuan Yin
DMdaoe mu
daoe mu
ZTZhuojia Tian
Zhuojia Tian
DLDong Li
Dong Li
XMXiting Ma
Xiting Ma
FLFacai Li
Facai Li
As there are few studies of Babesia spp. infection in cats in China, or anywhere in the world, the aim of this study was to explore the epidemic features of babesiosis in pet cats in China. In total, 429 blood samples were randomly collected in four different geographical regions. The 18S rRNA gene fragment of Babesia spp. was amplified by nest polymerase chain reaction (PCR), and haplotype and phylogenetic analysis of Babesia were performed to analyze the relationship of this protozoa. The total positive rate of infection was 2.8%. BLAST analysis indicated that Babesia gibsoni was detected in 12 cats. Among these, 4.3%, 3.1%, 0.8% and 2.0% were from Chongqing, Fujian, Hubei and Shandong, respectively. Haplotype and phylogenetic analysis showed that there were nine haplotypes and no obvious genetic variation among B. gibsoni populations. These findings will be helpful for understanding the epidemiology of Babesia spp. in China, and provide a foundation for developing effective preventative strategies.