Stenocereus eruca (Cactaceae), a prostrate cactus endemic to the Sonoran Desert, is thought to be highly clonal. We examined its clonal diversity and distribution: (1) at the population level, in four distinct populations along its distribution range; and (2) at a micro scale level, within a single population. Our objective was to evaluate the importance of sexual versus clonal recruitment through the use of RAPD markers. Contrary to previous field observations, clonal diversity was relatively high across the distribution range. This finding suggests that sexual recruitment is an important regeneration mechanism. The proportions of distinguishable genotypes (G/N = 0.83) and genotypic diversity (D = 0.987) were greater than in other clonal cacti, suggesting that clonal propagation is not the major regeneration mechanism. Autocorrelation analyses revealed a spatial genetic structure that may be the result of restricted gene flow (via pollen or seeds) and clonal propagation. A molecular variance analysis (AMOVA) indicated that most of the variation (66.3%) was found within and not across populations. Future studies on pollen and seed dispersal are needed to understand the role of the clonal habit in the mating system of S. eruca.

The tropical montane cloud forests are recognized as one of the most biodiverse ecosystems. In spite of this, they are among the most threatened ecosystems in the world. This study integrates three ecological approaches generally studied separately: climate change scenery, ecological niche and population dynamics of Oreomunnea mexicana (an endangered and relict species), to understand how environmental change affects the population structure in the cloud forest that will allow its conservation. Potential distribution under future climatic scenarios of the species at national and regional levels was generated from the Maxent algorithm. Also, the current abundance, distribution and the ecological niche of the species were analyzed at the regional level. Changes in potential distribution under two climatic models suggest a habitat reduction from 36% to 55% nationally, and 2% to 9% at a regional level, for 2050 and 2070, respectively. The current distribution of the species is fragmented and consists of subpopulations that have spatial structures of aggregated populations and a size structure in reversed “J” form. The ecological niche of the species is highly specialized and sensitive to environmental changes. O. mexicana is a flagship species of biological and cultural importance to the region’s inhabitants and could be fundamental to the conservation of tropical montane cloud forests.