The U-box E3 (PUB) family genes encode the E3 ubiquitin ligase enzyme, which determines substrate specific recognition during protein ubiquitination. They are widespread in plants and are critical for plant growth, development, and response to external stresses. However, there are few studies on the functional characteristic of PUB gene family in the important staple crop, maize (Zea mays L.). In this study, the PUB gene in maize was aimed to identify and classify through whole-genome screening. Phylogenetic tree, gene structure, conserved motif, chromosome location, gene duplication (GD), synteny, and cis-acting regulatory element of PUB member were analyzed. The expression profiles of ZmPUB gene family in maize during development and under abiotic stress and hormones treatment were analyzed by the RNA-seq data. A total of 79 PUB genes were identified in maize genome, and they were stratified into seven categories. There were 25 pairs of segmental duplications (SD) and 1 pair of tandem duplication (TD) identified in the maize PUB gene family. A close relationship was observed between the monocot plant maize and rice in PUB gene family. There were 94 kinds of cis-acting elements identified in the maize PUB gene family, which included 46 biotic- and abiotic-responsive elements, 19 hormone-responsive elements, 13 metabolic and growth-related elements. The expression profiles of maize PUB gene family showed characteristics of tissue specificity and response to abiotic stress and hormones treatment. These results provided an extensive overview of the maize PUB gene family.

The normal development of pollen grains and the completion of double fertilization in embryos are crucial for both the sexual reproduction of angiosperms and grain production. Actin depolymerizing factor (ADF) regulates growth, development, and responses to biotic and abiotic stress by binding to actin in plants. In this study, the function of the ZmADF1 gene was validated through bioinformatic analysis, subcellular localization, overexpression in maize and Arabidopsis, and knockout via CRISPR/Cas9. The amino acid sequence of ZmADF1 exhibited high conservation and a similar tertiary structure to that of ADF homologs. Subcellular localization analysis revealed that ZmADF1 is localized mainly to the nucleus and cytoplasm. The ZmADF1 gene was specifically expressed in maize pollen, and overexpression of the ZmADF1 gene decreased the number of pollen grains in the anthers of transgenic Arabidopsis plants. The germination rate of pollen and the empty seed shell rate in the fruit pods of the overexpressing plants were significantly greater than those in the wild-type (WT) plants. In maize, the pollen viability of the knockout lines was significantly greater than that of both the WT and the overexpressing lines. Our results confirmed that the ZmADF1 gene was specifically expressed in pollen and negatively regulated pollen quantity, vigor, germination rate, and seed setting rate. This study provides insights into ADF gene function and possible pathways for improving high-yield maize breeding.

The stem and leaves of fresh corn plants can be used as green silage or can be converted to biofuels, and the stalk sugar content and yield directly determine the application value of fresh corn. To identify the genetic variations and candidate genes responsible for the related traits in fresh corn, the genome-wide scan and genome-wide association analysis (GWAS) were performed. A total of 32 selective regions containing 172 genes were detected between sweet and waxy corns. Using the stalk sugar content and seven other agronomic traits measured in four seasons over two years, the GWAS identified ninety-two significant single nucleotide polymorphisms (SNPs). Most importantly, seven SNPs associated with the stalk sugar content were detected across multiple environments, which could explain 13.68–17.82% of the phenotypic variation. Accessions differing in genotype for certain significant SNPs showed significant variation in the stalk sugar content and other agronomic traits, and the expression levels of six important candidate genes were significantly different between two materials with different stalk sugar content. The genetic variations and candidate genes provide valuable resources for future studies of the molecular mechanism of the stalk sugar content and establish the foundation for molecular marker-assisted breeding of fresh corn.

The primary parts of corn stalks are the leaves and the stems, which comprise the cortex and the pith. Corn has long been cultivated as an grain crops, and now it is a primary global source of sugar, ethanol, and biomass-generated energy. Even though increasing the sugar content in the stalk is an important breeding goal, progress has been modest in many breeding researchers. Accumulation is the gradual rise in quantity when new additions are made. The challenging characteristics of such sugar content in corn stalks are below the protein, bio-economy, and mechanical injury. Hence, in this research, plant water-content-enabled micro-Ribonucleic acids (PWC-miRNAs) were designed to increase the sugar content in corn stalks following an accumulation rule. High-throughput sequencing of the transcriptome, short RNAs, and coding RNAs was performed here; leaf and stem degradation from two early-maturing Corn genotypes revealed new information on miRNA-associated gene regulation in corn during the sucrose accumulation process. For sugar content in corn stalk, PWC-miRNAs were used to establish the application of the accumulation rule for data-processing monitoring throughout. Through simulation, management, and monitoring, the condition is accurately predicted, providing a new scientific and technological means to improve the efficiency of the construction of sugar content in corn stalks. The experimental analysis of PWC-miRNAs outperforms sugar content in terms of performance, accuracy, prediction ratio, and evaluation. This study aims to provide a framework for increasing the sugar content of corn stalk.

Mesotrione is a widely used post-emergence herbicide for maize. The toxicity of mesotrione to maize (especially sweet corn) has been widely reported, and some sweet corn varieties are highly sensitive to mesotrione, which affects subsequent plant growth periods. However, the molecular mechanisms responsible for the differences in susceptibility to mesotrione are not known. By comparing changes in the transcriptome of mesotrione-tolerant line 301 and mesotrione-sensitive line 276 after mesotrione treatment, we found that the genes coding light-harvesting chlorophyll protein complex were induced in 301, and the genes coding loosening cell walls were overrepresented in 276. The net photosynthetic rate, maximum photochemical efficiency of leaf PSII, photochemical quenching of chlorophyll fluorescence, and the electron transport rate were significantly higher in 301 than in 276 after mesotrione treatment, and these effects became more severe as time passed. In addition, oxidative balance was also affected by mesotrione. Compared with 301, SOD, POD, and CAT activities were significantly reduced with longer exposure time in 276. The results suggested that sweet corn can mitigate herbicide mesotrione toxicity by improving photosynthesis, ROS scavenging, and cell wall synthesis.

The maize FT-interacting protein (FTIP) gene family represents a group of multiple C2 domain and transmembrane proteins (MCTPs), characterized by their unique structural motifs and membrane-spanning regions., plays crucial roles in intercellular communication and stress responses. Here, we systematically characterized 27 ZmFTIP genes unevenly distributed across 10 maize chromosomes. Phylogenetic analysis with rice, soybean, and Arabidopsis homologs revealed five evolutionary clades with monocot-specific conservation patterns. Promoter cis-element profiling identified hormone-responsive (ABA, JA, auxin) and stress-related motifs, corroborated by differential expression under abiotic stresses and phytohormone treatments. Notably, ZmFTIP18 and ZmFTIP25 showed sustained upregulation under cadmium exposure, while ZmFTIP13 exhibited downregulation. Synteny analysis demonstrated strong conservation with monocot FTIPs, suggesting ancient evolutionary origins. This comprehensive study provides foundational insights into ZmFTIP functional diversification and potential biotechnological applications.