Matthew Darwin Robbins

Dr. Matthew Darwin Robbins

orcid

Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 June 2019 in Theoretical and Applied Genetics
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Journal Article
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Steven R. LarsonSteven R. Larson
Steven R. Larson
LDLee DeHaan
Lee DeHaan
JPJesse Poland
Jesse Poland
XZXiangqi Zhang
Xiangqi Zhang
KDKevin Dorn
Kevin Dorn
Kevin JensenKevin Jensen
Kevin Jensen

28 December 2022 in Genome Biology and Evolution
Verified
Journal Article
Open access
PDF file
MRMatthew Darwin Robbins
Matthew Darwin Robbins
BBB Shaun Bushman
B Shaun Bushman
DHDavid R Huff
David R Huff
CBChristopher W Benson
Christopher W Benson
SWScott E Warnke
Scott E Warnke
PMPeter J Maughan
Peter J Maughan
Poa annua L. is a globally distributed grass with economic and horticultural significance as a weed and as a turfgrass. This dual significance, and its phenotypic plasticity and ecological adaptation, has made P. annua an intriguing plant for genetic and evolutionary studies. Because of the lack of genomic resources and its allotetraploid (2n = 4x = 28) nature, a reference genome sequence would be a valuable asset to better understand the significance and polyploid origin of Poa annua. Here we report a genome assembly with scaffolds representing the 14 haploid chromosomes that are 1.78 Gb in length with an N50 of 112 Mb and 96.7% of BUSCO orthologs. Seventy percent of the genome was identified as repetitive elements, 91.0% of which were Copia- or Gypsy-like long-terminal repeats. The genome was annotated with 76,420 genes spanning 13.3% of the 14 chromosomes. The two subgenomes originating from Poa infirma (Knuth) and Poa supina (Schrad) were sufficiently divergent to be distinguishable, but syntenic in sequence and annotation with repetitive elements contributing to the expansion of the P. infirma subgenome.

1 October 2021 in Environmental and Experimental Botany
Verified
Journal Article
Closed access
BBB. Shaun Bushman
B. Shaun Bushman
MRMatthew Darwin Robbins
Matthew Darwin Robbins
KTKimberly Thorsted
Kimberly Thorsted
Joseph RobinsJoseph Robins
Joseph Robins
SWScott E. Warnke
Scott E. Warnke
KHKaren Harris-Shultz
Karen Harris-Shultz

1 May 2020 in Crop Science
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Journal Article
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BBBradley Bushman
Bradley Bushman
MRMatthew Darwin Robbins
Matthew Darwin Robbins
Joseph RobinsJoseph Robins
Joseph Robins
KTKimberly Thorsted
Kimberly Thorsted
PHPaul Harris
Paul Harris
PJPaul G. Johnson
Paul G. Johnson

1 November 2024 in Agronomy
Verified
Journal Article
Open access
PDF file
AHAlexander J Hernandez
Alexander J Hernandez
BBBradley Bushman
Bradley Bushman
PJPaul Johnson
Paul Johnson
MRMatthew Darwin Robbins
Matthew Darwin Robbins
KPKaden Patten
Kaden Patten
Protocols to evaluate turfgrass quality rely on visual ratings that, depending on the rater’s expertise, can be subjective and susceptible to positive and negative drifts. We developed seasonal (spring, summer and fall) as well as inter-seasonal machine learning predictive models of turfgrass quality using multispectral and thermal imagery collected using unmanned aerial vehicles for two years as a proof-of-concept. We chose ordinal regression to develop the models instead of conventional classification to account for the ranked nature of the turfgrass quality assessments. We implemented a fuzzy correction of the resulting confusion matrices to ameliorate the probable drift of the field-based visual ratings. The best seasonal predictions were rendered by the fall (multi-class AUC: 0.774, original kappa 0.139, corrected kappa: 0.707) model. However, the best overall predictions were obtained when observation across seasons and years were used for model fitting (multi-class AUC: 0.872, original kappa 0.365, corrected kappa: 0.872), clearly highlighting the need to integrate inter-seasonal variability to enhance models’ accuracies. Vegetation indices such as the NDVI, GNDVI, RVI, CGI and the thermal band can render as much information as a full array of predictors. Our protocol for modeling turfgrass quality can be followed to develop a library of predictive models that can be used in different settings where turfgrass quality ratings are needed.

7 October 2008 in Analytical Chemistry
Verified
Journal Article
Closed access
OYOh Kyu Yoon
Oh Kyu Yoon
MRMatthew Darwin Robbins
Matthew Darwin Robbins
IZIgnacio A. Zuleta
Ignacio A. Zuleta
GBGriffin K. Barbula
Griffin K. Barbula
RZRichard Zare
Richard Zare