Harmful algae blooms (HABs) cause acute effects on marine ecosystems due to their production of endogenous toxins or their enormous biomass, leading to significant impacts on local economies and public health. Although HAB monitoring has been intensively performed at spatiotemporal scales in coastal areas of the world over the last decades, procedures have not yet been standardized. HAB monitoring procedures are complicated and consist of many methodologies, including physical, chemical, and biological water sample measurements. Each monitoring program currently uses different combinations of methodologies depending on site specific purposes, and many prior programs refer to the procedures in quotations. HAB monitoring programs in Chile have adopted the traditional microscopic and toxin analyses but not molecular biology and bacterial assemblage approaches. Here we select and optimize the HAB monitoring methodologies suitable for Chilean geography, emphasizing on metabarcoding analyses accompanied by the classical tools with considerations including cost, materials and instrument availability, and easiness and efficiency of performance. We present results from a pilot study using the standardized stepwise protocols, demonstrating feasibility and plausibility for sampling and analysis for the HAB monitoring. Such specific instructions in the standardized protocol are critical obtaining quality data under various research environments involving multiple stations, different analysts, various time-points, and long HAB monitoring duration.

Harmful Algal Blooms (HABs) have been classified depending on the causative organism and its impacts: non-toxic HAB (microalgae capable of affecting tourism and causing oxygen deficiency, which generates mortality of marine organisms), toxic HAB (microalgae capable of transferring toxins to the food chain), and ichthyotoxic HAB (microalgae capable of generating mechanical damage in fish). HABs represent a worldwide problem and have apparently increased in frequency, intensity, and geographic distribution at different latitudes. This review details the occurrence of HAB events in the Southeast Pacific, Chile, over a 65-year period, analysing two of the three types of HAB described: toxic and ichthyotoxic HABs. For this, we conducted a review from many different scientific sources and from the written press and social media, that have mentioned HAB events in the country. In Chile, the microalgae involved in HAB events are dinoflagellate (52%), diatoms (33%) and silicoflagellate (10%), with a total of 41 species and/or genera described in the literature. A total of 501 HAB events were recorded in Chile between 1956 and 2021, where 240 (47.9%), 238 (47.5%), 14 (2.7%), 8 (1.5%) and 1 (0.2%) event were caused by diatoms, dinoflagellate, silicoflagellate, raphidophycean and haptophyte, respectively. An apparent increase in the frequency of HAB events is observed since the first record in 1956, with a maximum of 46 events during the years 2017 and 2019. The highest incidence in fish is caused by the group of silicoflagellate, raphidophycean and haptophyte (23 events), where 10 events caused mortalities in salmon with an incidence rate of 43.4%. Unlike what is observed with diatoms and dinoflagellate, the events associated with these groups are less frequent, but hold a much higher salmon mortality rate. During the last 65 years, HAB’s geographic extent shows an apparent trend to increase south-to-north. However, the identification of events is closely linked to the areas where much of the country’s aquaculture is located and, therefore, it could be biased. In turn, it is observed that the apparent increase in HAB events could be associated with a greater monitoring effort after major events (e.g., after the 2016 HAB event). On the other hand, it is also recognized a lack of knowledge about harmful algae throughout the Chilean Humboldt Current system, particularly in the northern regions, such as Atacama and Coquimbo. Therefore, the total number of blooms that have occurred in fjords and channels, particularly those that have caused minor economic impacts for artisanal fishermen and the salmon and mussel farming sector, might be underestimated.

Marine biotoxins in fish and shellfish can cause several symptoms in consumers, such as diarrhea, amnesia, or even death by paralysis. Monitoring programs are in place for testing shellfish on a regular basis. In some countries testing is performed using the so-called mouse bioassay, an assay that faces ethical concerns not only because of animal distress, but also because it lacks specificity and results in high amounts of false positives. In Europe, for lipophilic marine biotoxins (LMBs), a chemical analytical method using LC-MS/MS was developed as an alternative and is now the reference method. However, safety is often questioned when relying solely on such a method, and as a result, the mouse bioassay might still be used. In this study the use of a cell-based assay for screening, i.e., the neuro-2a assay, in combination with the official LC-MS/MS method was investigated as a new alternative strategy for the detection and quantification of LMBs. To this end, samples that had been tested previously with the mouse bioassay were analyzed in the neuro-2a bioassay and the LC-MS/MS method. The neuro-2a bioassay was able to detect all LMBs at the regulatory levels and all samples that tested positive in the mouse bioassay were also suspect in the neuro-2a bioassay. In most cases, these samples contained toxin levels (yessotoxins) that explain the outcome of the bioassay but did not exceed the established maximum permitted levels.

Harmful algal blooms, in particular recurrent blooms of the dinoflagellate Alexandrium catenella, associated with paralytic shellfish poisoning (PSP), frequently limit commercial shellfish harvests, resulting in serious socio-economic consequences. Although the PSP-inducing species that threaten the most vulnerable commercial species of shellfish are very patchy and spatially heterogeneous in their distribution, the spatial and temporal scales of their effects have largely been ignored in monitoring programs and by researchers. In this study, we examined the spatial and temporal dynamics of PSP toxicity in the clam (Ameghinomya antiqua) in two fishing grounds in southern Chile (Ovalada Island and Low Bay). During the summer of 2009, both were affected by an intense toxic bloom of A. catenella (up to 1.1 × 10⁶ cells L⁻¹). Generalized linear models were used to assess the potential influence of different environmental variables on the field detoxification rates of PSP toxins over a period of 12 months. This was achieved using a four parameter exponential decay model to fit and compare field detoxification rates per sampling site. The results show differences in the spatial variability and temporal dynamics of PSP toxicity, given that greater toxicities (+10-fold) and faster detoxification (20% faster) are observed at the Ovalada Island site, the less oceanic zone, and where higher amounts of clam are annually produced. Our observations support the relevance of considering different spatial and temporal scales to obtain more accurate assessments of PSP accumulation and detoxification dynamics and to improve the efficacy of fisheries management after toxic events.