Muhammad Shoaib

Dr. Muhammad Shoaib

Microbiology, Chinese Academy of Agricultural Sciences, Beijing, China
orcid
Postdoctoral Researcher

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 January 2023 in Frontiers in Microbiology
Verified
Journal Article
Open access
MSMuhammad Shoaib
Muhammad Shoaib
DADr Amjad Islam Aqib
Dr Amjad Islam Aqib
IMIqra Muzammil
Iqra Muzammil
NMNoreen Majeed
Noreen Majeed
ZBZeeshan Ahmad Bhutta
Zeeshan Ahmad Bhutta
WPWanxia Pu
Wanxia Pu
Staphylococcus aureusis recognized as commensal as well as opportunistic pathogen of humans and animals. Methicillin resistant strain ofS. aureus(MRSA) has emerged as a major pathogen in hospitals, community and veterinary settings that compromises the public health and livestock production. MRSA basically emerged from MSSA after acquiring SCCmecelement through gene transfer containingmecA generesponsible for encoding PBP-2α. This protein renders the MRSA resistant to most of the β-lactam antibiotics. Due to the continuous increasing prevalence and transmission of MRSA in hospitals, community and veterinary settings posing a major threat to public health. Furthermore, high pathogenicity of MRSA due to a number of virulence factors produced byS. aureusalong with antibiotic resistance help to breach the immunity of host and responsible for causing severe infections in humans and animals. The clinical manifestations of MRSA consist of skin and soft tissues infection to bacteremia, septicemia, toxic shock, and scalded skin syndrome. Moreover, due to the increasing resistance of MRSA to number of antibiotics, there is need to approach alternatives ways to overcome economic as well as human losses. This review is going to discuss various aspects of MRSA starting from emergence, transmission, epidemiology, pathophysiology, disease patterns in hosts, novel treatment, and control strategies.

13 July 2023 in Frontiers in Microbiology
Verified
Journal Article
Open access
MSMuhammad Shoaib
Muhammad Shoaib
ZHZhoulin He
Zhoulin He
XGXiang Geng
Xiang Geng
MTMinjia Tang
Minjia Tang
RHRuochen Hao
Ruochen Hao
WPWanxia Pu
Wanxia Pu
Escherichia coli is a common inhabitant of the intestinal microbiota and is responsible for udder infection in dairy cattle and gastro-urinary tract infections in humans. We isolated E. coli strains from a dairy farm environment in Xinjiang, China, and investigated their epidemiological characteristics, phenotypic and genotypic resistance to antimicrobials, virulence-associated genes, and phylogenetic relationship. A total of 209 samples were collected from different sources (feces, slurry, water, milk, soil) and cultured on differential and selective agar media (MAC and EMB). The presumptive identification was done by the VITEK2 system and confirmed by 16S rRNA gene amplification by PCR. Antimicrobial susceptibility testing was done by micro-dilution assay, and genomic characterization was done by simple and multiplex polymerase chain reaction (PCR). A total of 338 E. coli strains were identified from 141/209 (67.5%) of the samples. Most of the E. coli strains were resistant to sulfamethoxazole/trimethoprim (62.43%), followed by cefotaxime (44.08%), ampicillin (33.73%), ciprofloxacin (31.36%), tetracycline (28.99%), and a lesser extent to florfenicol (7.99%), gentamicin (4.44%), amikacin (1.77%), and fosfomycin (1.18%). All of the strains were susceptible to meropenem, tigecycline, and colistin sulfate. Among the resistant strains, 44.4% were identified as multi-drug resistant (MDR) showing resistance to at least one antibiotic from ≥3 classes of antibiotics. Eighteen out of 20 antibiotic-resistance genes (ARGs) were detected with sul2 (67.3%), blaTEM (56.3%), gyrA (73.6%), tet(B) (70.4%), aph(3)-I (85.7%), floR (44.4%), and fosA3 (100%, 1/1) being the predominant genes among different classes of antibiotics. Among the virulence-associated genes (VAGs), ompA was the most prevalent (86.69%) followed by ibeB (85.0%), traT (84.91%), ompT (73.96%), fyuA (23.1%), iroN (23.1%), and irp2 gene (21.9%). Most of the E. coli strains were classified under phylogenetic group B1 (75.45%), followed by A (18.34%), C (2.96%), D (1.18%), E (1.18%), and F (0.30%). The present study identified MDR E. coli strains carrying widely distributed ARGs and VAGs from the dairy environment. The findings suggested that the dairy farm environment may serve as a source of mastitis-causing pathogens in animals and horizontal transfer of antibiotic resistance and virulence genes carrying bacterial strains to humans via contaminated milk and meat, surface water and agricultural crops.

18 October 2024 in Environmental Research
Verified
Journal Article
Closed access
MSMuhammad Shoaib
Muhammad Shoaib
MTMinjia Tang
Minjia Tang
DADr Amjad Islam Aqib
Dr Amjad Islam Aqib
XZXuejing Zhang
Xuejing Zhang
ZWZhongyong Wu
Zhongyong Wu
WPWanxia Pu
Wanxia Pu

1 June 2019 in Trends in Food Science & Technology
Verified
Journal Article
Closed access
DADr Amjad Islam Aqib
Dr Amjad Islam Aqib
Md. F. KulyarMd. F. Kulyar
Md. F. Kulyar
KAKhurram Ashfaq
Khurram Ashfaq
Zeeshan Ahmad BhuttaZeeshan Ahmad Bhutta
Zeeshan Ahmad Bhutta
MSMuhammad Shoaib
Muhammad Shoaib
RARais Ahmed
Rais Ahmed

1 November 2021 in Journal of Materials Research and Technology
Verified
Journal Article
Open access
AAAmbreen Ashar
Ambreen Ashar
IBIjaz A. Bhatti
Ijaz A. Bhatti
TSTayyaba Siddique
Tayyaba Siddique
SISobhy M. Ibrahim
Sobhy M. Ibrahim
SMSaima Mirza
Saima Mirza
MMMuhammad Mohsin
Muhammad Mohsin

1 November 2020 in Microbial Pathogenesis
Verified
Journal Article
Closed access
MAMuhammad Ahsan Anwar
Muhammad Ahsan Anwar
DADr Amjad Islam Aqib
Dr Amjad Islam Aqib
KAKhurram Ashfaq
Khurram Ashfaq
FDFarrah Deeba
Farrah Deeba
MKMuhammad Kasib Khan
Muhammad Kasib Khan
FAFozia Ashraf
Fozia Ashraf