In the last decade, the phylogenetic relationships within the genus Triplophysa have become controversial, due to a lack of molecular data. The mitochondrial genome plays a vital role in the reconstruction of phylogenetic relationships and in revealing the molecular evolution of bony fishes. Herein, we obtained the complete mitogenome of Triplophysa bombifrons via HiFi reads of the Pacbio Sequel II system and DNBSEQ short-reads. We compared all available mitogenomes of the Triplophysa genus and reconstructed the phylogeny of Nemacheilidae, based on the mitogenomes, using maximum likelihood (ML) methods. The results show that the complete mitogenome sequence of T. bombifrons was circular and 16,568 bp in length, including 13 protein-coding genes (PCGs), 22 transfer RNA (tRNA), 2 ribosomal RNA (rRNA), and a typical control region (D-loop). The most common start codons were ATG, except for cox1, and TAA/TAG were the stop codons for all PCGs. In total, 677 SNPs and 9 INDELs have been found by comparing the sequence divergence between this study and previous reports. Purity selection was found in all PCGs. Phylogeny was inferred by analyzing the 13 PCGs and the concatenated nucleotide sequences of 30 mitogenomes. The phylogenetic analyses based on the nucleotides of the 13 PCGs supported the assumption that the Triplophysa genus can be divided into 4 main clades and demonstrated that T. bombifrons and T. tenuis are closely related species for the first time. This study laid the foundation for further study on the mitogenome and phylogeny of Nemacheilidae fishes.

Little is known about how changes in the biodiversity and functional traits of macroinvertebrates in rivers respond to the responses of anthropic pressures and their driving factors. Macroinvertebrates were sampled at 17 sites in the Irtysh River Basin and classified macroinvertebrates into 10 traits and 38 categories between May and August 2022. Then, we performed R-mode linked to Q-mode (RLQ) analysis and calculated functional richness, evenness, divergence, and Rao’s quadratic entropy (RaoQ) for each site and community-weighted means for each trait category. Our results indicated that there were pronounced alterations in species variability in the urban region. Functional divergence indicated fierce competition among species and considerable niche overlap in the urban region. Functional evenness indicated that species abundance distribution and interspecific functional distance were not uniform in the urban region. Functional richness indicated that the urban region was the strongest region in terms of niche occupation, resource utilization, and buffering capacity for environmental fluctuations. Rao’s quadratic entropy showed that the trait difference of macroinvertebrates was the largest in all regions, which was caused by the gradient environmental difference. Research has revealed that urbanization significantly influences the evolutionary trajectory of macroinvertebrate fauna, culminating in an upsurge in pollution-tolerant species and a convergence of functional traits. We recommend strengthening the control of urban and industrial pollution and wise planning and management of land and water resources to mitigate the impact of anthropogenic destruction on habitat fragmentation in the Irtysh River Basin.

In order to resolve the long-standing controversy surrounding the relationships within the Triplophysa genus, we conducted an extensive analysis of the complete mitogenome of Triplophysa labiata using DNBSEQ short reads. Additionally, we reconstructed the phylogeny of the Nemacheilidae family using mitogenome data. By comparing all available mitogenomes within the Triplophysa genus, we gained valuable insights into its evolutionary history. Our findings revealed that the mitogenome sequence of T. labiata is circular, spanning a length of 16,573 bp. It encompasses 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), 2 ribosomal RNAs (rRNAs), and a control region (D-loop). Among the PCGs, the start codon ATG was commonly observed, except in cox1, while the stop codons TAA/TAG/T were found in all PCGs. Furthermore, purifying selection was evident across all PCGs. Utilizing maximum likelihood (ML) methods, we employed the 13 PCGs and the concatenated nucleotide sequences of 30 Triplophysa mitogenomes to infer the phylogeny. Our results strongly supported the division of the Triplophysa genus into four primary clades. Notably, our study provides the first evidence of the close relationship between T. labiata and T. dorsalis. These findings serve as a significant foundation for future investigations into the mitogenomics and phylogeny of Nemacheilidae fishes, paving the way for further advancements in this field of research.

To study the morphological differences between and the evolutionary mechanisms driving the differentiation of geographically distinct populations of Gymnodiptychus dybowskii, 158 fish were collected from the Turks River and the Manas River in Xinjiang from 2020 to 2021 with the approval of the Academic Ethics Committee. The morphological characteristics of the fish were assessed using classical fish ecology methods such as traditional morphometric measurements and the framework approach. The results showed that the morphological characteristics of the populations in the Turks River and Manas River were significantly different; a one-way ANOVA revealed 22 highly significant differences (p < 0.01) and 1 significant difference (p < 0.05) among the 33 morphological traits of the observed populations, and a principal component analysis revealed that there was no overlap between the two populations of G. dybowskii. The main characteristics associated with principle component 1 were the terminus of the dorsal fin to the ventral origin of the caudal fin (D—F), the dorsal origin of the caudal fin to the origin of the anal fin (E—H), and the insertion of the pectoral fin to the terminus of the pectoral fin (J—K); the main factors associated with principal component 2 were the body height (BD), the terminus of the dorsal fin to the insertion of the pelvic fin (D—I), the caudal peduncle height (CPH), and the tip of the snout to the last end of the frontal maxilla (A—B); and the main traits associated with principle component 3 were the terminus of the anal fin to the origin of the anal fin (G—H), the body width (BW), the insertion of the pelvic fin to the terminus of the pelvic (I—L), the insertion of the pectoral fin to the terminus of the pectoral fin (J—K), and the insertion of the pelvic fin to the insertion of the pectoral fin (I—J). An OPLS-DA revealed that the two populations could be wholly separated and that the intergroup growth traits of the Manas River population were different and significantly greater than those of the Turks River population. The discriminant functions of the Turks River and Manas River populations of G. dybowskii were as follows: Y_T = −432.033 + 1787.748X₁ + 826.517X₂ + 249.002X₃ + 1183.050X₄ + 554.934X₅ + 999.296X₆ + 627.428X₇; Y_M = −569.819 + 2041.044X₁ + 344.942X₂ + 333.737X₃ + 940.512X₄ + 348.222X₅ + 1167.770X₆ + 1015.904X₇. According to a coefficient of variation analysis, a total of nine traits, namely, EI/BL, C-D/BL, E-F/BL, F-H/BL, H-I/BL, C-J/BL, D-I/BL, D-H/BL, and D-F/BL, had a CD > 1.28, indicating that the differences in these nine traits had reached the subspecies level. The results showed that G. dybowskii significantly differed between the two geographically distinct populations in the Turks River and the Manas River and have differentiated to the subspecies level. This study provides a basis for a better investigation of the population structure of highland endemic fishes and the mechanisms by which they diverged and lays a foundation for developing and utilizing germplasm resources from endemic fishes in Xinjiang.

Channel catfish (Ictalurus punctatus) is a widely consumed freshwater fish known for its nutritional value but is highly prone to spoilage. This study investigated the quality changes of catfish muscle tissue under refrigeration and freezing through physicochemical, metabolomic, and microbial analyses. Results revealed that sensory scores decreased significantly during storage, with frozen samples maintaining similar scores to refrigerated ones after extended periods. Protein degradation and lipid oxidation, indicated by TVB-N and TBARS levels, were more pronounced during prolonged freezing. Metabolomic profiling identified 261 differential metabolites under long-term freezing, including elevated phosphatidylcholines, sphingomyelins, and disrupted amino acid pathways. Shifts in spoilage-associated microbial genera, such as Pseudomonas, and the correlations between microbial genera and specific metabolites, such as Methylobacterium with methylmalonic acid, highlighted microbial-driven spoilage processes. These findings provided a comprehensive understanding of quality deterioration during storage, guiding the development of enhanced preservation strategies for aquatic products.