Over the past century, increases in indigenous woody plant species, also known as woody encroachment (WE), has occurred in grasslands and savannas across the globe. While the impact on grassland and savanna composition and productivity has been well studied, little is known of the impacts on the hydrological cycle. WE may increase evapotranspiration (ET) losses, leading to reduced infiltration and ultimately reduced freshwater availability, which is of particular concern in arid and semi-arid areas. The aim of this study was to determine the effect of Colophospermum mopane (mopane) encroachment on ET in a semi-arid savanna located in South Africa. Mopane is widely distributed across southern Africa, and is one of the main encroaching species of the region. Following an assessment of the validity of two surface renewal approaches, SR1 and SRDT, against short eddy covariance campaigns for sensible heat flux estimation, the SR1 approach was used to estimate ET at an experimental woody plant clearing trial from November 2019 to July 2022. For the two drier years of the study, the removal of mopane trees had little effect on ET. However, for the wettest year of the study, the removal of mopane trees decreased ET by 12%, supporting the hypothesis that the conversion from grass dominance to woody dominance can increase ET. Annual ET exceeded annual rainfall in all 3 years, indicating that the vegetation supplements its water use with soil water that has accumulated during previous wet seasons, or that tree roots facilitate hydraulic lift of deep soil water, or groundwater, to depths within the rooting depth of both trees and grasses. Further research is needed to confirm the exact mechanism involved, and the consequences of this for groundwater and streamflow at landscape scales.