Yaqi Wang

Dr. Yaqi Wang

orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 August 2022 in Scientific Data
Verified
Journal Article
Open access
PDF file
Kai JinKai Jin
Kai Jin
XHXingru Huang
Xingru Huang
JZJingxin Zhou
Jingxin Zhou
YLYunxiang Li
Yunxiang Li
YYYan Yan
Yan Yan
JYJuan Ye
Juan Ye
Retinal vasculature provides an opportunity for direct observation of vessel morphology, which is linked to multiple clinical conditions. However, objective and quantitative interpretation of the retinal vasculature relies on precise vessel segmentation, which is time consuming and labor intensive. Artificial intelligence (AI) has demonstrated great promise in retinal vessel segmentation. The development and evaluation of AI-based models require large numbers of annotated retinal images. However, the public datasets that are usable for this task are scarce. In this paper, we collected a color fundus image vessel segmentation (FIVES) dataset. The FIVES dataset consists of 800 high-resolution multi-disease color fundus photographs with pixelwise manual annotation. The annotation process was standardized through crowdsourcing among medical experts. The quality of each image was also evaluated. To the best of our knowledge, this is the largest retinal vessel segmentation dataset for which we believe this work will be beneficial to the further development of retinal vessel segmentation.

14 June 2023 in Scientific Data
Verified
Journal Article
Open access
PDF file
YZYifan Zhang
Yifan Zhang
FYFan Ye
Fan Ye
LCLingxiao Chen
Lingxiao Chen
FXFeng Xu
Feng Xu
XCXiaodiao Chen
Xiaodiao Chen
XHXingru Huang
Xingru Huang
When dentists see pediatric patients with more complex tooth development than adults during tooth replacement, they need to manually determine the patient’s disease with the help of preoperative dental panoramic radiographs. To the best of our knowledge, there is no international public dataset for children’s teeth and only a few datasets for adults’ teeth, which limits the development of deep learning algorithms for segmenting teeth and automatically analyzing diseases. Therefore, we collected dental panoramic radiographs and cases from 106 pediatric patients aged 2 to 13 years old, and with the help of the efficient and intelligent interactive segmentation annotation software EISeg (Efficient Interactive Segmentation) and the image annotation software LabelMe. We propose the world’s first dataset of children’s dental panoramic radiographs for caries segmentation and dental disease detection by segmenting and detecting annotations. In addition, another 93 dental panoramic radiographs of pediatric patients, together with our three internationally published adult dental datasets with a total of 2,692 images, were collected and made into a segmentation dataset suitable for deep learning.

9 August 2023 in Medical Image Analysis
Verified
Journal Article
Open access
JLJi Lin
Ji Lin
XHXingru Huang
Xingru Huang
HZHuiyu Zhou
Huiyu Zhou
YWYaqi Wang
Yaqi Wang
QZQianni Zhang
Qianni Zhang
Automated retinal blood vessel segmentation in fundus images provides important evidence to ophthalmologists in coping with prevalent ocular diseases in an efficient and non-invasive way. However, segmenting blood vessels in fundus images is a challenging task, due to the high variety in scale and appearance of blood vessels and the high similarity in visual features between the lesions and retinal vascular. Inspired by the way that the visual cortex adaptively responds to the type of stimulus, we propose a Stimulus-Guided Adaptive Transformer Network (SGAT-Net) for accurate retinal blood vessel segmentation. It entails a Stimulus-Guided Adaptive Module (SGA-Module) that can extract local-global compound features based on inductive bias and self-attention mechanism. Alongside a light-weight residual encoder (ResEncoder) structure capturing the relevant details of appearance, a Stimulus-Guided Adaptive Pooling Transformer (SGAP-Former) is introduced to reweight the maximum and average pooling to enrich the contextual embedding representation while suppressing the redundant information. Moreover, a Stimulus-Guided Adaptive Feature Fusion (SGAFF) module is designed to adaptively emphasize the local details and global context and fuse them in the latent space to adjust the receptive field (RF) based on the task. The evaluation is implemented on the largest fundus image dataset (FIVES) and three popular retinal image datasets (DRIVE, STARE, CHASEDB1). Experimental results show that the proposed method achieves a competitive performance over the other existing method, with a clear advantage in avoiding errors that commonly happen in areas with highly similar visual features. The sourcecode is publicly available at: https://github.com/Gins-07/SGAT.

21 September 2021
Verified
Book Chapter
Closed access
PDF file
YLYunxiang Li
Yunxiang Li
SWShuai Wang
Shuai Wang
JWJun Wang
Jun Wang
GZGuodong Zeng
Guodong Zeng
WLWenjun Liu
Wenjun Liu
YWYaqi Wang
Yaqi Wang

9 February 2021 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Closed access
JLJingxiong Li
Jingxiong Li
YWYaqi Wang
Yaqi Wang
SWShuai Wang
Shuai Wang
JWJun Wang
Jun Wang
JLJun Liu
Jun Liu
LSLing-ling Sun
Ling-ling Sun
Coronavirus disease 2019 (COVID-19) is one of the most destructive pandemic after millennium, forcing the world to tackle a health crisis. Automated lung infections classification using chest X-ray (CXR) images could strengthen diagnostic capability when handling COVID-19. However, classifying COVID-19 from pneumonia cases using CXR image is a difficult task because of shared spatial characteristics, high feature variation and contrast diversity between cases. Moreover, massive data collection is impractical for a newly emerged disease, which limited the performance of data thirsty deep learning models. To address these challenges, Multiscale Attention Guided deep network with Soft Distance regularization ( MAG-SD ) is proposed to automatically classify COVID-19 from pneumonia CXR images. In MAG-SD , MA-Net is used to produce prediction vector and attention from multiscale feature maps. To improve the robustness of trained model and relieve the shortage of training data, attention guided augmentations along with a soft distance regularization are posed, which aims at generating meaningful augmentations and reduce noise. Our multiscale attention model achieves better classification performance on our pneumonia CXR image dataset. Plentiful experiments are proposed for MAG-SD which demonstrates its unique advantage in pneumonia classification over cutting-edge models. The code is available at https://github.com/JasonLeeGHub/MAG-SD .

19 April 2019 in IEEE/ACM Transactions on Computational Biology and Bioinformatics
Verified
Journal Article
Closed access
YWYaqi Wang
Yaqi Wang
LSLing-ling Sun
Ling-ling Sun
Qun JinQun Jin
Qun Jin
Pneumothorax is a common pulmonary disease that can lead to dyspnea and can be life-threatening. X-ray examination is the main means to diagnose this disease. Computer-aided diagnosis of pneumothorax on chest X-ray, as a prerequisite for timely cure, has been widely studied, but it is still not satisfactory to achieve highly accurate results. In this paper, an image classification algorithm based on deep convolutional neural network (DCNN) is proposed for high-resolution medical image analysis of pneumothorax X-rays, which features a Network In Network (NIN) for cleaning the data, random histogram equalization data augmentation processing and a DCNN. The experimental results indicate that the proposed method can effectively increase the correct diagnosis rate of pneumothorax, and the Area under Curve (AUC) of the test verified in the experiment is 0.9844 on ZJU-2 test data and 0.9906 on the ChestX-ray14, respectively. In addition, a large number of atmospheric pleura samples are visualized and analyzed based on the experimental results and in-depth learning characteristics of the algorithm. The analysis results verify the validity of feature extraction for the network. Combined with the results of these two aspects, the proposed X-ray image processing algorithm can effectively improve the classification accuracy of pneumothorax photographs.