Shear thickening fluids (STFs) have been shown to improve the effectiveness of fabrics used in soft body armor applications. They are used to increase the puncture and ballistic impact resistance of Kevlar^® fabrics. However, the effect of using STFs with natural fabrics such as flax appears to have never been studied. Similarly, the hybridization of different fabric types impregnated with STF has also only undergone limited study. The rheology of STFs at varying concentrations of nanosilica dispersed in polyethylene glycol (PEG) was studied at different temperatures. It was found that the STFs behave as a non-Newtonian fluid in response to changes in shear rate. In this study the effectiveness on the puncture and ballistic impact resistance of impregnating flax fabric with STF at concentrations of 30%, 50%, and 70% w/w of nanosilica in PEG was investigated. The effect of hybridization of flax and Kevlar^® fabrics impregnated with STF was also investigated. The puncture resistance of both flax fabrics treated with STFs and hybrids treated with STFs was found to increase significantly and can be controlled by STF concentration. The ballistic impact resistance was also found to increase in the hybrid samples when STF concentration was at least 50%. The flax treated with STFs showed either a decrease in specific energy absorption per layer for the lower STF concentration, or a very small increase at 70% STF concentration.