Ke Nie

Dr. Ke Nie


Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
14 May 2021 in Medical Physics
Verified
Journal Article
Closed access
PDF file
YZYang Zhang
Yang Zhang
NYNing Yue
Ning Yue
MSMin‐Ying Su
Min‐Ying Su
BLBo Liu
Bo Liu
YDYi Ding
Yi Ding
KNKe Nie
Ke Nie

1 September 2019 in Magnetic Resonance Imaging
Verified
Journal Article
Closed access
LSLiming Shi
Liming Shi
YZYang Zhang
Yang Zhang
KNKe Nie
Ke Nie
XSXiaonan Sun
Xiaonan Sun
TNTianye Niu
Tianye Niu
LSLydia Su
Lydia Su

1 June 2019 in International Journal of Radiation Oncology, Biology, Physics
Verified
Journal Article
Closed access
KNKe Nie
Ke Nie
HAHania Al-Hallaq
Hania Al-Hallaq
XLX. Allen Li
X. Allen Li
SBStanley H. Benedict
Stanley H. Benedict
JSJason W. Sohn
Jason W. Sohn
Issam El NaqaIssam El Naqa
Issam El Naqa

8 March 2016 in Journal of Applied Clinical Medical Physics
Verified
Journal Article
Open access
PDF file
KNKe Nie
Ke Nie
JPJean Pouliot
Jean Pouliot
ESEric Smith
Eric Smith
CCCynthia Chuang
Cynthia Chuang
The purpose of this study is to evaluate the performance variations in commercial deformable image registration (DIR) tools for adaptive radiation therapy and further to interpret the differences using clinically available terms. Three clinical examples (prostate, head and neck (HN), and cranial spinal irradiation (CSI) with L‐spine boost) were evaluated in this study. Firstly, computerized deformed CT images were generated using simulation QA software with virtual deformations of bladder filling (prostate), neck flexion/bite‐block repositioning/tumor shrinkage (HN), and vertebral body rotation (CSI). The corresponding transformation matrices served as a “reference” for the following comparisons. Three commercialized DIR algorithms: the free‐form deformation from MIMVista 5.5 and the RegRefine from MIMMaestro 6.0, the multipass B‐spline from VelocityAI v3.0.1, and the adaptive demons from OnQ rts 2.1.15, were applied between the initial images and the deformed CT sets. The generated adaptive contours and dose distributions were compared with the “reference” and among each other. The performance in transferring contours was comparable among all three tools with an average Dice similarity coefficient of 0.81 for all the organs. However, the dose warping accuracy appeared to rely on the evaluation end points and methodologies. Point‐dose differences could show a difference of up to 23.3 Gy inside the PTVs and to overestimate up to 13.2 Gy for OARs, which was substantial for a 72 Gy prescription dose. Dosevolume histogram‐based evaluation might not be sensitive enough to illustrate all the detailed variations, while isodose assessment on a slice‐by‐slice basis could be tedious. We further explored the possibility of using 3D gamma index analysis for warping dose variation assessment, and observed differences in dose warping using different DIR tools. Overall, our results demonstrated that evaluation based only on the performance of contour transformation could not guarantee the accuracy in dose warping, while dose‐transferring validation strongly relied on the evaluation endpoint. As dose‐transferring errors could cause misinterpretations when attempting to accumulate dose for adaptive radiation therapy and more DIR tools are available for clinical use, a standard and clinically meaningful quality assurance criterion should be established for DIR QA in the near future.PACS number(s): 87.57

1 February 2022 in Medical Physics
Verified
Journal Article
Closed access
PDF file
YLYanjing Li
Yanjing Li
MRMeral Reyhan
Meral Reyhan
YZYin Zhang
Yin Zhang
Xiao WangXiao Wang
Xiao Wang
JZJinghao Zhou
Jinghao Zhou
KNKe Nie
Ke Nie

17 November 2021 in Frontiers in Oncology
Verified
Journal Article
Open access
HWHao Wang
Hao Wang
YZYongkang Zhou
Yongkang Zhou
Xiao WangXiao Wang
Xiao Wang
YZYin Zhang
Yin Zhang
CMChi Ma
Chi Ma
KNKe Nie
Ke Nie
Purpose: This study was conducted in order to determine the reproducibility and repeatability of cone-beam computed tomography (CBCT) radiomics features.Methods: The first-, second-, and fifth-day CBCT images from 10 head and neck (H&N) cancer patients and 10 pelvic cancer patients were retrospectively collected for this study. Eighteen common radiomics features were extracted from the longitudinal CBCT images using two radiomics packages. The reproducibility of CBCT-derived radiomics features was assessed using the first-day image as input and compared across the two software packages. The site-specific intraclass correlation coefficient (ICC) was used to quantitatively assess the agreement between packages. The repeatability of CBCT-based radiomics features was evaluated by comparing the following days of CBCT to the first-day image and quantified using site-specific concordance correlation coefficient (CCC). Furthermore, the correlation with volume for all the features was assessed with linear regression and R2 as correlation parameters.Results: The first-order histogram-based features such as skewness and entropy showed good agreement computed in either software package (ICCs ≥ 0.80), while the kurtosis measurements were consistent in H&N patients between the two software tools but not in pelvic cases. The ICCs for GLCM-based features showed good agreement (ICCs ≥ 0.80) between packages in both H&N and pelvic groups except for the GLCM-correction. The GLRLM-based texture features were overall less consistent as calculated by the two different software packages compared with the GLCM-based features. The CCC values of all first-order and second-order GLCM features (except GLCM-energy) were all above 0.80 from the 2-day part test–retest set, while the CCC values all dropped below the cutoff after 5-day treatment scans. All first-order histogram-based and GLCM-texture-based features were not highly correlated with volume, while two GLRLM features, in both H&N and pelvic cohorts, showed R2 ≥0.8, meaning a high correlation with volume.Conclusion: The reproducibility and repeatability of CBCT-based radiomics features were assessed and compared for the first time on both H&N and pelvic sites. There were overlaps of stable features in both disease sites, yet the overall stability of radiomics features may be disease-/protocol-specific and a function of time between scans.