Medical datasets are often highly imbalanced with over-representation of prevalent conditions and poor representation of rare medical conditions. Due to privacy concerns, it is challenging to aggregate large datasets between health care institutions.We propose synthesizing pathology in medical images as a means to overcome these challenges. We implement a deep convolutional generative adversarial network (DCGAN) to create synthesized chest X-rays based upon a modest sized labeled dataset. We used a combination of real and synthesized images to train deep convolutional neural networks (DCNNs) to detect pathology across five classes of chest X-rays. Comparative study of DCNNs trained with combination of real and synthesized images showed that these networks can outperform similar networks trained solely with real images in pathology classification. This improved performance is largely attributable to the balancing of the dataset using DCGAN synthesized images, where classes that are lacking in example images are preferentially augmented.
8 April 2021 in IEEE Transactions on Neural Networks and Learning Systems
Dropout is a well-known regularization method by sampling a sub-network from a larger deep neural network and training different sub-networks on different subsets of the data. Inspired by the dropout concept, we propose EDropout as an energy-based framework for pruning neural networks in classification tasks. In this approach, a set of binary pruning state vectors (population) represents a set of corresponding sub-networks from an arbitrary original neural network. An energy loss function assigns a scalar energy loss value to each pruning state. The energy-based model (EBM) stochastically evolves the population to find states with lower energy loss. The best pruning state is then selected and applied to the original network. Similar to dropout, the kept weights are updated using backpropagation in a probabilistic model. The EBM again searches for better pruning states and the cycle continuous. This procedure is a switching between the energy model, which manages the pruning states, and the probabilistic model, which updates the kept weights, in each iteration. The population can dynamically converge to a pruning state. This can be interpreted as dropout leading to pruning the network. From an implementation perspective, unlike most of the pruning methods, EDropout can prune neural networks without manually modifying the network architecture code. We have evaluated the proposed method on different flavors of ResNets, AlexNet, $l_{1}$ pruning, ThinNet, ChannelNet, and SqueezeNet on the Kuzushiji, Fashion, CIFAR-10, CIFAR-100, Flowers, and ImageNet data sets, and compared the pruning rate and classification performance of the models. The networks trained with EDropout on average achieved a pruning rate of more than 50% of the trainable parameters with approximately < 5% and < 1% drop of Top-1 and Top-5 classification accuracy, respectively.
Despite the current surge of interest in autonomous robotic systems, robot activity recognition within restricted indoor environments remains a formidable challenge. Conventional methods for detecting and recognizing robotic arms' activities often rely on vision-based or light detection and ranging (LiDAR) sensors, which require line-of-sight (LoS) access and may raise privacy concerns, for example, in nursing facilities. This research pioneers an innovative approach harnessing channel state information (CSI) measured from WiFi signals, subtly influenced by the activity of robotic arms. We developed an attention-based network to classify eight distinct activities performed by a Franka Emika robotic arm in different situations. Our proposed bidirectional vision transformer-concatenated (BiVTC) methodology aspires to predict robotic arm activities accurately, even when trained on activities with different velocities, all without dependency on external or internal sensors or visual aids. Considering the high dependency of CSI data to the environment motivated us study the problem of sniffer location selection, by systematically changing the sniffer's location and collecting different sets of data. Finally, this paper also marks the first publication of the CSI data of eight distinct robotic arm activities, collectively referred to as RoboFiSense. This initiative aims to provide a benchmark dataset and baselines to the research community, fostering advancements in the field of robotics sensing.
Objective: To develop an artificial intelligence–based pipeline to assess and triage patient-submitted postoperative wound images. Background: The rise of outpatient surgeries, remote monitoring, and patient-submitted wound images via online portals has contributed to a growing administrative workload on clinicians. Early identification of surgical site infection (SSI) is essential for reducing postoperative morbidity. Methods: Patients ≥18 years old who underwent surgery at 9 affiliated Mayo Clinic hospitals (2019-2022) and were captured by the National Surgical Quality Improvement Program (NSQIP) were included. Eligibility required submission of one image via the patient portal within 30 days after surgery. Images were independently screened in duplicate to determine the presence of an incision. SSI outcomes were obtained from NSQIP. The developed model consisted of 2 stages: incision detection and SSI detection in images with incisions. Four pretrained architectures were evaluated using 10-fold cross-validation, with upsampling and data augmentation to mitigate class imbalance. An end-to-end pipeline, image quality assessment and sensitivity analysis stratified by race were also performed. Results: Among 6060 patients, the median age was 54 years (interquartile range: 40–65), 61.4% (n=3805) were female, and 92.5% (n=5731) identified as White. SSIs were confirmed in 6.2% (n=386) images. Vision Transformer outperformed all others, achieving an incision detection accuracy of 0.94 (area under the curve=0.98) and an SSI detection accuracy of 0.73 (area under the curve=0.81). In addition, it demonstrated strong performance in assessing image quality. Sensitivity analysis revealed comparable performance across racial subgroups. Conclusion: This artificial intelligence pipeline demonstrates promising performance in automating wound image assessment and SSI detection, reducing clinical workload and improving postoperative care.
Threshold-based early warning systems (EWS) are used to predict adverse events (Aes). Machine learning (ML) algorithms that incorporate all EWS scores prior to an event may perform better in hospitalized patients. The deterioration index (DI) is a proprietary EWS. A threshold of DI >60 is used to predict a composite AE: all-cause mortality, cardiac arrest, transfer to intensive care, and evaluation by the rapid response team in practice. The DI scores were collected for adult patients (≥18 y-o) hospitalized on medical or surgical services during 8-23-2021 to 3-31-2022 from four different Mayo Clinic sites in the United States. A novel ML model was developed and trained on a retrospective cohort of hospital encounters. DI scores were represented in a high-dimensional space using random convolution kernels to facilitate training of a classifier and the area under the receiver operator characteristics curve (AUC) was calculated. Multiple time intervals prior to an AE were analyzed. A leave-one-out cross-validation protocol was used to evaluate performance across separate clinic sites. Three different classifiers were trained on 59,617 encounter-derived DI scores in high-dimensional feature space and the AUCs were compared to two threshold models. All three tested classifiers improved the AUC over the threshold approaches from 0.56 and 0.57 to 0.76, 0.85 and 0.94. Time interval analysis of the top performing classifier showed best accuracy in the hour before an event occurred (AUC 0.91), but prediction held up even in the 12 h before an AE (AUC 0.80 at minus 12 h, 0.81 at minus 9 h, 0.85 at minus 6 h, and 0.88 at minus 3 h before an AE). Multisite cross-validation using leave-one-out approach on data from four different clinical sites showed broad generalization performance of the top performing ML model with AUC of 0.91, 0.91, 0.95, and 0.91. A novel ML model that incorporates all the longitudinal DI scores prior to an AE in a hospitalized patient performs better at outcome prediction than the currently used threshold model. The use of clinical data, a generalized ML technique, and successful multisite cross-validation demonstrate the feasibility of our model in clinical implementation. No funding to report.