Ashok Choudhary

Dr. Ashok Choudhary

orcid

Research Focus & Metrics

Academic Career Length

2Years (2025-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 August 2025 in Bioengineering
Verified
Journal Article
Open access
PDF file
Yashbir SinghYashbir Singh
Yashbir Singh
Quincy Alexander HathawayQuincy Alexander Hathaway
Quincy Alexander Hathaway
VKVarekan Keishing
Varekan Keishing
Sara SalehiSara Salehi
Sara Salehi
YWYujia Wei
Yujia Wei
JAJesper B Andersen
Jesper B Andersen
The integration of artificial intelligence (AI) in medical imaging has revolutionized diagnostic capabilities, yet the black-box nature of deep learning models poses significant challenges for clinical adoption. Current explainable AI (XAI) approaches, including SHAP, LIME, and Grad-CAM, predominantly focus on post hoc explanations that may inadvertently undermine clinical decision-making by providing misleading confidence in AI outputs. This paper presents a systematic review and meta-analysis of 67 studies (covering 23 radiology, 19 pathology, and 25 ophthalmology applications) evaluating XAI fidelity, stability, and performance trade-offs across medical imaging modalities. Our meta-analysis of 847 initially identified studies reveals that LIME achieves superior fidelity (0.81, 95% CI: 0.78–0.84) compared to SHAP (0.38, 95% CI: 0.35–0.41) and Grad-CAM (0.54, 95% CI: 0.51–0.57) across all modalities. Post hoc explanations demonstrated poor stability under noise perturbation, with SHAP showing 53% degradation in ophthalmology applications (ρ = 0.42 at 10% noise) compared to 11% in radiology (ρ = 0.89). We demonstrate a consistent 5–7% AUC performance penalty for interpretable models but identify modality-specific stability patterns suggesting that tailored XAI approaches are necessary. Based on these empirical findings, we propose a comprehensive three-pillar accountability framework that prioritizes transparency in model development, interpretability in architecture design, and a cautious deployment of post hoc explanations with explicit uncertainty quantification. This approach offers a pathway toward genuinely accountable AI systems that enhance rather than compromise clinical decision-making quality and patient safety.

3 July 2025 in Annals of Surgery
Verified
Journal Article
Open access
HMHala Muaddi
Hala Muaddi
ACAshok Choudhary
Ashok Choudhary
FLFrank Lee
Frank Lee
SAStephanie S. Anderson
Stephanie S. Anderson
EHElizabeth Habermann
Elizabeth Habermann
CTCornelius A A. Thiels
Cornelius A A. Thiels
Objective: To develop an artificial intelligence–based pipeline to assess and triage patient-submitted postoperative wound images. Background: The rise of outpatient surgeries, remote monitoring, and patient-submitted wound images via online portals has contributed to a growing administrative workload on clinicians. Early identification of surgical site infection (SSI) is essential for reducing postoperative morbidity. Methods: Patients ≥18 years old who underwent surgery at 9 affiliated Mayo Clinic hospitals (2019-2022) and were captured by the National Surgical Quality Improvement Program (NSQIP) were included. Eligibility required submission of one image via the patient portal within 30 days after surgery. Images were independently screened in duplicate to determine the presence of an incision. SSI outcomes were obtained from NSQIP. The developed model consisted of 2 stages: incision detection and SSI detection in images with incisions. Four pretrained architectures were evaluated using 10-fold cross-validation, with upsampling and data augmentation to mitigate class imbalance. An end-to-end pipeline, image quality assessment and sensitivity analysis stratified by race were also performed. Results: Among 6060 patients, the median age was 54 years (interquartile range: 40–65), 61.4% (n=3805) were female, and 92.5% (n=5731) identified as White. SSIs were confirmed in 6.2% (n=386) images. Vision Transformer outperformed all others, achieving an incision detection accuracy of 0.94 (area under the curve=0.98) and an SSI detection accuracy of 0.73 (area under the curve=0.81). In addition, it demonstrated strong performance in assessing image quality. Sensitivity analysis revealed comparable performance across racial subgroups. Conclusion: This artificial intelligence pipeline demonstrates promising performance in automating wound image assessment and SSI detection, reducing clinical workload and improving postoperative care.

29 May 2026 in Bioengineering
Verified
Journal Article
Open access
PDF file
Yashbir SinghYashbir Singh
Yashbir Singh
YHYassine Himeur
Yassine Himeur
CFColleen M. Farrelly
Colleen M. Farrelly
PKPeguy Kem-Meka Tiotsop Kadzue
Peguy Kem-Meka Tiotsop Kadzue
Jennifer RozenblitJennifer Rozenblit
Jennifer Rozenblit
Quincy Alexander HathawayQuincy Alexander Hathaway
Quincy Alexander Hathaway
Graph neural networks (GNNs) are increasingly used for medical imaging analysis and biological data modeling, where the integration of radiomics, topology, geometry, and generative artificial intelligence (AI) may improve representation learning from medical images and related biomedical data. Across the reviewed literature, GNNs show particular value for modeling spatial relationships, multimodal interactions, graph-structured biological networks, and non-Euclidean imaging features that are difficult to capture using conventional convolutional architectures alone. Topology- and geometry-aware approaches further expand this capability by encoding multi-scale structure, higher-order relationships, curvature, geodesic organization, and equivariant spatial priors. Hybrid graph–transformer models and generative graph methods represent emerging directions for modeling long-range dependencies, augmenting scarce datasets, supporting synthetic pretraining, and improving representation learning in low-label or heterogeneous biomedical settings. However, clinical translation remains limited by variability in graph construction, limited external validation, computational cost, scalability constraints, interpretability challenges, and uncertainty regarding the biological realism of synthetic data. Overall, this review highlights that GNN-based medical imaging analysis is most likely to advance when graph construction is biologically justified, model performance is evaluated across diverse clinical cohorts, and technical gains are paired with transparent validation, interpretability, and implementation strategies.

8 December 2025 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Closed access
ACAshok Choudhary
Ashok Choudhary
FLFrank G. Lee
Frank G. Lee
HMHala Muaddi
Hala Muaddi
CTCornelius A A. Thiels
Cornelius A A. Thiels
Hojjat SalehinejadHojjat Salehinejad
Hojjat Salehinejad
Surgical site infections (SSIs) are common postoperative complications that increase patient morbidity, hospital stays, and healthcare costs. Early detection and precise documentation are critical for timely intervention and improved outcomes. While patients often submit images of their wounds through a patient portal for remote monitoring, manual review is challenging due to image variability, high volume, and subjectivity, underscoring the need for automated assessment tools. In this paper, we present Vision Transformer for CAptioning of Incision Images (ViTCAI), a vision-language model designed for automated triage and captioning of postoperative incision images. Fine-tuned on a clinically annotated dataset, ViTCAI improves descriptive accuracy in identifying surgical incisions and SSIs. Our results show that ViTCAI provides consistent, detailed captions that can support clinical decision-making, reducing workload and enhancing diagnostic efficiency in postoperative care.

11 January 2025 in arXiv
Verified
Preprint
Open access
PDF file
ACAshok Choudhary
Ashok Choudhary
CTCornelius A A. Thiels
Cornelius A A. Thiels
Hojjat SalehinejadHojjat Salehinejad
Hojjat Salehinejad
Training and fine-tuning deep learning models, especially large language models (LLMs), on limited and imbalanced datasets poses substantial challenges. These issues often result in poor generalization, where models overfit to dominant classes and underperform on minority classes, leading to biased predictions and reduced robustness in real-world applications. To overcome these challenges, we propose augmenting features in the embedding space by generating synthetic samples using a range of techniques. By upsampling underrepresented classes, this method improves model performance and alleviates data imbalance. We validate the effectiveness of this approach across multiple open-source text classification benchmarks, demonstrating its potential to enhance model robustness and generalization in imbalanced data scenarios.