Debesh Jha

Dr. Debesh Jha

Department of Radiology, Northwestern University, Chicago, IL, USA

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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24 December 2019
Verified
Book Chapter
Closed access
PDF file
Debesh JhaDebesh Jha
Debesh Jha
PSPia H. Smedsrud
Pia H. Smedsrud
MRMichael A. Riegler
Michael A. Riegler
PHPål Halvorsen
Pål Halvorsen
TLThomas de Lange
Thomas de Lange
HJHåvard D. Johansen
Håvard D. Johansen

4 March 2021 in IEEE Access
Verified
Journal Article
Open access
Debesh JhaDebesh Jha
Debesh Jha
Sharib AliSharib Ali
Sharib Ali
NTNikhil Kumar Tomar
Nikhil Kumar Tomar
Håvard Johansen DagenborgHåvard Johansen Dagenborg
Håvard Johansen Dagenborg
DJDag Johansen
Dag Johansen
PHPal Halvorsen
Pal Halvorsen
Computer-aided detection, localization, and segmentation methods can help improve colonoscopy procedures. Even though many methods have been built to tackle automatic detection and segmentation of polyps, benchmarking of state-of-the-art methods still remains an open problem. This is due to the increasing number of researched computer vision methods that can be applied to polyp datasets. Benchmarking of novel methods can provide a direction to the development of automated polyp detection and segmentation tasks. Furthermore, it ensures that the produced results in the community are reproducible and provide a fair comparison of developed methods. In this paper, we benchmark several recent state-of-the-art methods using Kvasir-SEG, an open-access dataset of colonoscopy images for polyp detection, localization, and segmentation evaluating both method accuracy and speed. Whilst, most methods in literature have competitive performance over accuracy, we show that the proposed ColonSegNet achieved a better trade-off between an average precision of 0.8000 and mean IoU of 0.8100, and the fastest speed of 180 frames per second for the detection and localization task. Likewise, the proposed ColonSegNet achieved a competitive dice coefficient of 0.8206 and the best average speed of 182.38 frames per second for the segmentation task. Our comprehensive comparison with various state-of-the-art methods reveals the importance of benchmarking the deep learning methods for automated real-time polyp identification and delineations that can potentially transform current clinical practices and minimise miss-detection rates.

5 January 2021 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Open access
Debesh JhaDebesh Jha
Debesh Jha
PSPia H. Smedsrud
Pia H. Smedsrud
DJDag Johansen
Dag Johansen
TLThomas de Lange
Thomas de Lange
Håvard Johansen DagenborgHåvard Johansen Dagenborg
Håvard Johansen Dagenborg
Michael Alexander RieglerMichael Alexander Riegler
Michael Alexander Riegler
Colonoscopy is considered the gold standard for detection of colorectal cancer and its precursors. Existing examination methods are, however, hampered by high overall miss-rate, and many abnormalities are left undetected. Computer-Aided Diagnosis systems based on advanced machine learning algorithms are touted as a game-changer that can identify regions in the colon overlooked by the physicians during endoscopic examinations, and help detect and characterize lesions. In previous work, we have proposed the ResUNet++ architecture and demonstrated that it produces more efficient results compared with its counterparts U-Net and ResUNet. In this paper, we demonstrate that further improvements to the overall prediction performance of the ResUNet++ architecture can be achieved by using Conditional Random Field (CRF) and Test-Time Augmentation (TTA). We have performed extensive evaluations and validated the improvements using six publicly available datasets: Kvasir-SEG, CVC-ClinicDB, CVC-ColonDB, ETIS-Larib Polyp DB, ASU-Mayo Clinic Colonoscopy Video Database, and CVC-VideoClinicDB. Moreover, we compare our proposed architecture and resulting model with other state-of-the-art methods. To explore the generalization capability of ResUNet++ on different publicly available polyp datasets, so that it could be used in a real-world setting, we performed an extensive cross-dataset evaluation. The experimental results show that applying CRF and TTA improves the performance on various polyp segmentation datasets both on the same dataset and cross-dataset. To check the model's performance on difficult to detect polyps, we selected, with the help of an expert gastroenterologist, 196 sessile or flat polyps that are less than ten millimeters in size. This additional data has been made available as a subset of Kvasir-SEG. Our approaches showed good results for flat or sessile and smaller polyps, which are known to be one of the major reasons for high polyp miss-rates. This is one of the significant strengths of our work and indicates that our methods should be investigated further for use in clinical practice.

23 December 2021 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Open access
ASAbhishek Srivastava
Abhishek Srivastava
Debesh JhaDebesh Jha
Debesh Jha
SCSukalpa Chanda
Sukalpa Chanda
UPUmapada Pal
Umapada Pal
Håvard Johansen DagenborgHåvard Johansen Dagenborg
Håvard Johansen Dagenborg
PHPal Halvorsen
Pal Halvorsen
Methods based on convolutional neural networks have improved the performance of biomedical image segmentation. However, most of these methods cannot efficiently segment objects of variable sizes and train on small and biased datasets, which are common for biomedical use cases. While methods exist that incorporate multi-scale fusion approaches to address the challenges arising with variable sizes, they usually use complex models that are more suitable for general semantic segmentation problems. In this paper, we propose a novel architecture called Multi-Scale Residual Fusion Network (MSRF-Net), which is specially designed for medical image segmentation. The proposed MSRF-Net is able to exchange multi-scale features of varying receptive fields using a Dual-Scale Dense Fusion (DSDF) block. Our DSDF block can exchange information rigorously across two different resolution scales, and our MSRF sub-network uses multiple DSDF blocks in sequence to perform multi-scale fusion. This allows the preservation of resolution, improved information flow and propagation of both high- and low-level features to obtain accurate segmentation maps. The proposed MSRF-Net allows to capture object variabilities and provides improved results on different biomedical datasets. Extensive experiments on MSRF-Net demonstrate that the proposed method outperforms the cutting-edge medical image segmentation methods on four publicly available datasets. We achieve the Dice Coefficient (DSC) of 0.9217, 0.9420, and 0.9224, 0.8824 on Kvasir-SEG, CVC-ClinicDB, 2018 Data Science Bowl dataset, and ISIC-2018 skin lesion segmentation challenge dataset respectively. We further conducted generalizability tests and achieved DSC of 0.7921 and 0.7575 on CVC-ClinicDB and Kvasir-SEG, respectively.

1 November 2023 in IEEE Internet of Things Journal
Verified
Journal Article
Closed access
Ashish RauniyarAshish Rauniyar
Ashish Rauniyar
DHDesta Haileselassie Hagos
Desta Haileselassie Hagos
Debesh JhaDebesh Jha
Debesh Jha
JHJan Erik Håkegård
Jan Erik Håkegård
UBUlas Bagci
Ulas Bagci
VVVladimir Vlassov
Vladimir Vlassov
With the advent of the Internet of Things (IoT), artificial intelligence (AI), machine learning (ML), and deep learning (DL) algorithms, the landscape of data-driven medical applications has emerged as a promising avenue for designing robust and scalable diagnostic and prognostic models from medical data. This has gained a lot of attention from both academia and industry, leading to significant improvements in healthcare quality. However, the adoption of AI-driven medical applications still faces tough challenges, including meeting security, privacy, and Quality-of-Service (QoS) standards. Recent developments in federated learning (FL) have made it possible to train complex machine-learned models in a distributed manner and have become an active research domain, particularly processing the medical data at the edge of the network in a decentralized way to preserve privacy and address security concerns. To this end, in this article, we explore the present and future of FL technology in medical applications where data sharing is a significant challenge. We delve into the current research trends and their outcomes, unraveling the complexities of designing reliable and scalable FL models. This article outlines the fundamental statistical issues in FL, tackles device-related problems, addresses security challenges, and navigates the complexity of privacy concerns, all while highlighting its transformative potential in the medical field. Our study primarily focuses on medical applications of FL, particularly in the context of global cancer diagnosis. We highlight the potential of FL to enable computer-aided diagnosis tools that address this challenge with greater effectiveness than traditional data-driven methods. Recent literature has shown that FL models are robust and generalize well to new data, which is essential for medical applications. We hope that this comprehensive review will serve as a checkpoint for the field, summarizing the current state of the art and identifying open problems and future research directions.

27 May 2021 in Scientific Data
Verified
Journal Article
Open access
PDF file
PSPia H. Smedsrud
Pia H. Smedsrud
Vajira Lasantha ThambawitaVajira Lasantha Thambawita
Vajira Lasantha Thambawita
SHSteven A. Hicks
Steven A. Hicks
HGHenrik Gjestang
Henrik Gjestang
ONOda Olsen Nedrejord
Oda Olsen Nedrejord
Pål HalvorsenPål Halvorsen
Pål Halvorsen
Artificial intelligence (AI) is predicted to have profound effects on the future of video capsule endoscopy (VCE) technology. The potential lies in improving anomaly detection while reducing manual labour. Existing work demonstrates the promising benefits of AI-based computer-assisted diagnosis systems for VCE. They also show great potential for improvements to achieve even better results. Also, medical data is often sparse and unavailable to the research community, and qualified medical personnel rarely have time for the tedious labelling work. We present Kvasir-Capsule, a large VCE dataset collected from examinations at a Norwegian Hospital. Kvasir-Capsule consists of 117 videos which can be used to extract a total of 4,741,504 image frames. We have labelled and medically verified 47,238 frames with a bounding box around findings from 14 different classes. In addition to these labelled images, there are 4,694,266 unlabelled frames included in the dataset. The Kvasir-Capsule dataset can play a valuable role in developing better algorithms in order to reach true potential of VCE technology.