Deepak Shantharaj

Dr. Deepak Shantharaj

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 May 2019 in Plants
Verified
Journal Article
Open access
PDF file
MHMohammad Hassan
Mohammad Hassan
JMJohn McInroy
John McInroy
JJJarrod Jones
Jarrod Jones
DSDeepak Shantharaj
Deepak Shantharaj
MLMark R. Liles
Mark R. Liles
JKJoseph W. Kloepper
Joseph W. Kloepper
Plant growth-promoting rhizobacteria (PGPR) are increasingly used in crops worldwide. While selected PGPR strains can reproducibly promote plant growth under controlled greenhouse conditions, their efficacy in the field is often more variable. Our overall aim was to determine if pectin or orange peel (OP) amendments to Bacillus velezensis (Bv) PGPR strains could increase soybean growth and nodulation by Bradyrhizobium japonicum in greenhouse and field experiments to reduce variability. The treatments included untreated soybean seeds planted in field soil that contained Bv PGPR strains and non-inoculated controls with and without 0.1% (w/v) pectin or (1 or 10 mg/200 μL) orange peel (OP) amendment. In greenhouse and field tests, 35 and 55 days after planting (DAP), the plants were removed from pots, washed, and analyzed for treatment effects. In greenhouse trials, the rhizobial inoculant was not added with Bv strains and pectin or OP amendment, but in the field trial, a commercial B. japonicum inoculant was used with Bv strains and pectin amendment. In the greenhouse tests, soybean seeds inoculated with Bv AP193 and pectin had significantly increased soybean shoot length, dry weight, and nodulation by indigenous Bradyrhizobium compared to AP193 without pectin. In the field trial, pectin with Bv AP193 significantly increased the shoot length, dry weight, and nodulation of a commercial Bradyrhizobium japonicum compared to Bv AP193 without pectin. In greenhouse tests, OP amendment with AP193 at 10 mg significantly increased the dry weight of shoots and roots compared to AP193 without OP amendment. The results demonstrate that pectin-rich amendments can enhance Bv-mediated soybean growth promotion and nodulation by indigenous and inoculated B. japonicum.

1 April 2023 in Plant Disease
Verified
Journal Article
Closed access
DSDeepak Shantharaj
Deepak Shantharaj
ENEber Naranjo
Eber Naranjo
MMMarcus V. Merfa
Marcus V. Merfa
PCPaul A. Cobine
Paul A. Cobine
SSSwadeshmukul Santra
Swadeshmukul Santra
LFLeonardo De La Fuente
Leonardo De La Fuente
The xylem-limited pathogen Xylella fastidiosa causes severe economic losses worldwide, and no effective antimicrobial disease management options are available. The goal of this study was to evaluate the efficacy of a novel ZnO-based nanoparticle formulation, Zinkicide TMN110 (ZnK), against X. fastidiosa in vitro and in planta. In vitro, minimum bactericidal concentration (MBC) of ZnK analyzed in Pierce’s Disease 2 medium was estimated at approximately 60 ppm. Time-kill kinetics assay showed a 100% reduction of culturable X. fastidiosa in less than 1 h after ZnK treatment. Microfluidic chambers assays showed that ZnK also inhibits X. fastidiosa cell aggregation and growth under flow conditions. Phytotoxicity assessments in the greenhouse demonstrated that ZnK can be applied as a soil drench in 50 ml at 500 ppm/plant/week up to four times to tobacco and blueberry without causing visible damage. ZnK was also evaluated for disease control in the greenhouse using tobacco infected with X. fastidiosa subsp. fastidiosa strain TemeculaL. ZnK soil drench weekly applications at concentrations of 500 followed by 1,000 ppm (500/1,000) and 500/500/1,000 ppm (in 50 ml each), reduced X. fastidiosa populations by >2 to 3 log10 units and disease severity by approximately 57 and 76%, respectively, compared with the untreated control. Similarly, when blueberry plants infected with X. fastidiosa subsp. multiplex strain AlmaEm3 were soil drenched with ZnK at concentrations 1,000/1,000 ppm and 1,000/1,000/500 ppm (in 200 ml each), the bacterial population was reduced by approximately 1 to 2 log10 units, and disease severity decreased by approximately 39 and 43%, respectively. Overall, this study shows antibacterial activity of ZnK against X. fastidiosa and its effectiveness in plants to reduce disease symptoms under controlled conditions.

1 September 2024 in Plant Disease
Verified
Journal Article
Closed access
DSDeepak Shantharaj
Deepak Shantharaj
MRMiguel Román-Écija
Miguel Román-Écija
MVMaría Pilar Velasco-Amo
María Pilar Velasco-Amo
JNJuan Navas-Cortes
Juan Navas-Cortes
BLBlanca B. Landa
Blanca B. Landa
LFLeonardo De La Fuente
Leonardo De La Fuente
Strains of the bacterial pathogen Xylella fastidiosa subspecies multiplex (Xfm) and pauca (Xfp) isolated from symptomatic almond and olive plants in Spain and Italy were used in this study. Because of the risk of host jump and considering the importance of southern highbush blueberry production in Spain, we tested a small set of these strains for their potential to infect and cause disease symptoms in blueberries under greenhouse experiments. Xfm IVIA5901 (isolated from almonds in Alicante, Spain) caused symptoms similar to those caused by Xfm AlmaEm3 (isolated from blueberries in Georgia, U.S.A., and used as a reference strain capable of inducing severe symptoms in blueberry). Nevertheless, bacterial populations of Xfm IVIA5901 in planta were significantly lower than those of Xfm AlmaEm3. Xfm ESVL (isolated from almonds, Alicante, Spain) and Xfp XYL1961/18 (isolated from olives, Ibiza Island, Spain) caused limited symptoms, while Xfm XYL466/19 (isolated from wild olives, Mallorca Island, Spain) and Xfm XF3348 (isolated from almonds, Mallorca Island, Spain) and Xfp De Donno (isolated from olives, Puglia, Italy, and representative of the devastating olive quick decline syndrome) did not cause symptoms nor colonize blueberries. This study suggests that certain strains already found in Europe could infect blueberry if conditions conducive for a host jump in this region are met, such as proximity of blueberries to other infected hosts and presence of insect vectors that feed on these crops. Surveys on the presence of X. fastidiosa in blueberries in Spain and other European countries are needed to anticipate possible issues.

17 December 2023 in Plant Disease
Verified
Journal Article
Closed access
LBLindsey Burbank
Lindsey Burbank
LGLaura Gomez
Laura Gomez
DSDeepak Shantharaj
Deepak Shantharaj
NANoor Abdelsamad
Noor Abdelsamad
KVKern Vasquez
Kern Vasquez
RNRachel Naegele
Rachel Naegele
Xylella fastidiosa, the causal agent of Pierce's disease of grapevine, has been found in all major grape-growing regions in California, U.S.A. Large collections of X. fastidiosa isolates are available from these areas, which enable comparative studies of pathogen genetic traits and virulence. Owing to the significant resource requirements for experiments with X. fastidiosa in grapevine, however, most studies use only a single isolate to evaluate disease, and it is not clear how much variability between isolates impacts disease development in experimental or natural settings. In this study, a comprehensive panel of X. fastidiosa isolates from all California grape-growing regions was tested for virulence in susceptible grapevine and in the model host plant, tobacco. Seventy-one isolates were tested, 29 in both grapevine and tobacco. The results of this study highlight the inherent variability of inoculation experiments with X. fastidiosa, including variation in disease severity in plants inoculated with a single isolate, and variability between experimental replicates. There were limited differences in virulence between isolates that were consistent across experimental replicates, or across different host plants. This suggests that choice of isolate within the X. fastidiosa subsp. fastidiosa Pierce's disease group may not make any practical difference when testing in susceptible grape varieties, and that pathogen evolution has not significantly changed virulence of Pierce's disease isolates within California. The location of isolation also did not dictate relative disease severity. This information will inform experimental design for future studies of X. fastidiosa in grapevine and provide important context for genomic research.

25 April 2020 in bioRxiv
Verified
Preprint
Open access
PDF file
EGEmile Gluck-Thaler
Emile Gluck-Thaler
ACAude Cerutti
Aude Cerutti
APAlvaro Perez-Quintero
Alvaro Perez-Quintero
JBJules Butchacas
Jules Butchacas
Veronica Roman-ReynaVeronica Roman-Reyna
Veronica Roman-Reyna
JJJonathan Jacobs
Jonathan Jacobs
Vascular pathogens travel long distances through host veins leading to life-threatening, systemic infections. In contrast, non-vascular pathogens remain restricted to infection sites, triggering localized symptom development. The contrasting features of vascular and non-vascular diseases suggest distinct etiologies, but the basis for each remains unclear. Here, we show that the hydrolase CbsA acts as a phenotypic switch between vascular and non-vascular plant pathogenesis. cbsA was enriched in genomes of vascular phytopathogenic bacteria in the Xanthomonadaceae family and absent in most non-vascular species. CbsA expression allowed non-vascular Xanthomonas to cause vascular blight while cbsA mutagenesis resulted in reduction of vascular or enhanced non-vascular symptom development. Phylogenetic hypothesis testing further revealed that cbsA was lost in multiple non-vascular lineages and more recently gained by some vascular subgroups, suggesting that vascular pathogenesis is ancestral. Our results overall demonstrate how the gain and loss of single loci can facilitate the evolution of complex ecological traits.

1 November 2025 in Plant Disease
Verified
Journal Article
Closed access
DSDeepak Shantharaj
Deepak Shantharaj
BLBisho Lawaju
Bisho Lawaju
RBRishi Bhandari
Rishi Bhandari
AHAuston Holland
Auston Holland
KWKylie Weis
Kylie Weis
NPNeha Potnis
Neha Potnis
Plants experience multiple biotic stressors, both aboveground and belowground pathogens and pests. Although multiple pathogens infect plants naturally, research has been predominantly focused on binary interactions between the host and a single pathogen. Here, we investigated the outcome of single and simultaneous infection of tomato plants by parasitic root-knot nematode Meloidogyne spp. and foliar bacterial plant pathogen Xanthomonas perforans, which causes bacterial spot disease. We assessed the interactions of these pathogens and the disease outcome on nematode-resistant and susceptible varieties that are near-isogenic for the Mi resistance gene. Greenhouse experiments indicated that the presence of X. perforans supported the increased proliferation of root-knot nematode, specifically, incognita, on nematode-resistant cultivars containing the Mi resistance gene, with no significant influence on nematode-susceptible cultivars. On the other hand, Mi resistance gene–harboring tomato cultivars displayed increased susceptibility toward bacterial spot pathogen irrespective of the presence of nematode. These findings suggest that foliar bacterial infection may compromise Mi-mediated resistance to parasitic nematodes. It is essential to consider simultaneous infections by multiple pathogens when ensuring the long-term durability of the host resistance.