Rhizodeposits, root exudates, and root border cells are vital components of the rhizosphere that significantly affect root colonization capacity and multiplication of rhizosphere microbes, as well as secretion of organic bioactive compounds. The rhizosphere is an ecological niche, in which beneficial bacteria compete with other microbiota for organic carbon compounds and interact with plants through root colonization activity to the soil. Some of these root-colonizing beneficial rhizobacteria also colonize endophytically and multiply inside plant roots. In the rhizosphere, these components contribute to complex physiological processes, including cell growth, cell differentiation, and suppression of plant pathogenic microbes. Understanding how rhizodeposits, root exudates, and root border cells interact in the rhizosphere in the presence of rhizobacterial populations is necessary to decipher their synergistic role for the improvement of plant health. This review highlights the diversity of plant growth-promoting rhizobacteria (PGPR) genera, their functions, and the interactions with rhizodeposits in the rhizosphere.

Plant growth-promoting rhizobacteria (PGPR) are increasingly used in crops worldwide. While selected PGPR strains can reproducibly promote plant growth under controlled greenhouse conditions, their efficacy in the field is often more variable. Our overall aim was to determine if pectin or orange peel (OP) amendments to Bacillus velezensis (Bv) PGPR strains could increase soybean growth and nodulation by Bradyrhizobium japonicum in greenhouse and field experiments to reduce variability. The treatments included untreated soybean seeds planted in field soil that contained Bv PGPR strains and non-inoculated controls with and without 0.1% (w/v) pectin or (1 or 10 mg/200 μL) orange peel (OP) amendment. In greenhouse and field tests, 35 and 55 days after planting (DAP), the plants were removed from pots, washed, and analyzed for treatment effects. In greenhouse trials, the rhizobial inoculant was not added with Bv strains and pectin or OP amendment, but in the field trial, a commercial B. japonicum inoculant was used with Bv strains and pectin amendment. In the greenhouse tests, soybean seeds inoculated with Bv AP193 and pectin had significantly increased soybean shoot length, dry weight, and nodulation by indigenous Bradyrhizobium compared to AP193 without pectin. In the field trial, pectin with Bv AP193 significantly increased the shoot length, dry weight, and nodulation of a commercial Bradyrhizobium japonicum compared to Bv AP193 without pectin. In greenhouse tests, OP amendment with AP193 at 10 mg significantly increased the dry weight of shoots and roots compared to AP193 without OP amendment. The results demonstrate that pectin-rich amendments can enhance Bv-mediated soybean growth promotion and nodulation by indigenous and inoculated B. japonicum.

The pectin lyase activity of 59 Bacillus amyloliquefaciens subsp. plantarum (Bap) strains was tested in vitro on Pectate Agar (PA) and Tris-Spizizen Salts (TSS) medium. Bap strains were cultured on TSA medium and washed three times with sterile water before the inoculation on PA media. Higher and lower pectate lyase activity were observed in six (AP193, AP203, AP299, AP80, AP102, and AP52) and four (AP 194, AP214, AP215, and AP305) Bap strains compared to other Bap strains. A total of 12 Bap strains (AP67, AP71, AP77, AP78, AP85, AP102, AP108, AP135, AP143, AP189, AP192, and AP193) grew vigorously on TSS medium. A total of six Bap strains (AP194, AP204, AP214, AP216, AP219, and HD73) had lower growth compared to other Bap strains. Pectin (1%) were used for in vitro PA and TSS medium. Pectate lyase and utilization activity were not found in Bacillus thuringiensis subsp. kurstaki strain HD73 compared to Bap strains. A draft genome sequence for strains AP194 and AP214 that were negative for pectin utilization were generated using an Illumina MiSeq. RAST analysis revealed that the pectin-associated gene altronate hydrolase (uxaA) absent in AP 214 strain. Multiple amino acid alignments of exuT and uxuB gene sequence showed dissimilarities among AP194, AP214, and reference Bap strains.

Universal primers for gyrB were used to screen 79 strains of Bacillus species. The genomic DNA from each strain was extracted, and the PCR product of gyrB was amplified and purified for gene sequencing. Gene sequences were edited, and aligned, and Bacillus amyloliquefaciens subsp. plantarum (Bap) strains identified based on the gyrB phylogenetic tree. Two primers ( exuT and uxuB ) were designed to detect pectin-associated transporter gene exuT and D-mannonate oxidoreductase gene uxuB . The Bap strains were then screened for the presence of the exuT and uxuB genes. These two pectin-utilizing genes were confirmed in 57 and 54 Bap strains by PCR amplification. Second, an in vitro tests were conducted to screen 59 Bap strains using pectin as a sole carbon source to confirm the pectate lyase and utilizing activity. Pectate Agar (PA) and Tris-Spizizen Salts (TSS) medium were used for the in vitro pectate lyase and degradation assays.

There are two major limitations involved in this study. The first being that data with previous performance dealing with Islamic mutual funds and ETFs is limited due to lack of historic research. Another limitation is reflected in the methodology. With a lack of trail portfolios with measurable performance, a replication is implemented; however, this may be considered a weak substitute. Given the limitations, future research is encouraged, especially involving improving the methods, using a better accuracy in comparing conventional vs Islamic portfolios.