Jun Zhu

Dr. Jun Zhu

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 May 2021 in Science Advances
Verified
Journal Article
Open access
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WZWenjun Zhou
Wenjun Zhou
OKOybek Kholiqov
Oybek Kholiqov
Jun ZhuJun Zhu
Jun Zhu
MZMingjun Zhao
Mingjun Zhao
LZLara L. Zimmermann
Lara L. Zimmermann
VSVivek J. Srinivasan
Vivek J. Srinivasan
New technology noninvasively monitors cerebral blood flow index and brain function in adult humans.

29 November 2017 in Lab on a Chip
Verified
Journal Article
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YQYuxin Qiao
Yuxin Qiao
XZXiaoyan Zhao
Xiaoyan Zhao
Jun ZhuJun Zhu
Jun Zhu
RTRan Tu
Ran Tu
LDLibing Dong
Libing Dong
WDWenbin Du
Wenbin Du
Lipases are ubiquitous enzymes of great physiological significance that have been used extensively in multiple industries. Environmental microorganisms are a major source for the discovery of novel lipases with high catalytic efficiency and selectivity. However, current plate-based screening of lipase-producing strains is time consuming, labour intensive and inefficient. In this study, we developed an ultra-high throughput screening pipeline for lipase-producing strains based on fluorescence-activated droplet sorting (FADS) using a compact optical system that could be easily set up in an alignment-free manner. The pipeline includes droplet generation, droplet incubation, picoinjection of the fluorescence probe, and sorting of droplets with a throughput of 2 × 106 drops per h. We applied the pipeline to screen samples collected from different locations, including sediments from a hot spring in Tibet, soils from the Zoige wetland, contaminated soils from an abandoned oilfield, and a Chinese Daqu starter. In total, we obtained 47 lipase-producing bacterial strains belonging to seven genera, including Staphylococcus, Bacillus, Enterobacter, Serratia, Prolinoborus, Acinetobacter, and Leclercia. We believe that this FADS-based pipeline could be extended to screen various enzymes from the environment, and may find wide applications in breeding of industrial microorganisms.

14 July 2021 in Light: Science & Applications
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Journal Article
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Jun ZhuJun Zhu
Jun Zhu
Hercules Rezende FreitasHercules Rezende Freitas
Hercules Rezende Freitas
IMIzumi Maezawa
Izumi Maezawa
LJLee-Way Jin
Lee-Way Jin
VSVivek J. Srinivasan
Vivek J. Srinivasan
In vivo, minimally invasive microscopy in deep cortical and sub-cortical regions of the mouse brain has been challenging. To address this challenge, we present an in vivo high numerical aperture optical coherence microscopy (OCM) approach that fully utilizes the water absorption window around 1700 nm, where ballistic attenuation in the brain is minimized. Key issues, including detector noise, excess light source noise, chromatic dispersion, and the resolution-speckle tradeoff, are analyzed and optimized. Imaging through a thinned-skull preparation that preserves intracranial space, we present volumetric imaging of cytoarchitecture and myeloarchitecture across the entire depth of the mouse neocortex, and some sub-cortical regions. In an Alzheimer’s disease model, we report that findings in superficial and deep cortical layers diverge, highlighting the importance of deep optical biopsy. Compared to other microscopic techniques, our 1700 nm OCM approach achieves a unique combination of intrinsic contrast, minimal invasiveness, and high resolution for deep brain imaging.

4 July 2017 in Applied Sciences
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Journal Article
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Jun ZhuJun Zhu
Jun Zhu
Conrad MerkleConrad Merkle
Conrad Merkle
MBMarcel Bernucci
Marcel Bernucci
SCShau Poh Chong
Shau Poh Chong
VSVivek J. Srinivasan
Vivek J. Srinivasan
Optical Coherence Tomography Angiography (OCTA) refers to a powerful class of OCT scanning protocols and algorithms that selectively enhance the imaging of blood vessel lumens, based mainly on the motion and scattering of red blood cells (RBCs). Though OCTA is widely used in clinical and basic science applications for visualization of perfused blood vessels, OCTA is still primarily a qualitative tool. However, more quantitative hemodynamic information would better delineate disease mechanisms, and potentially improve the sensitivity for detecting early stages of disease. Here, we take a broader view of OCTA in the context of microvascular hemodynamics and light scattering. Paying particular attention to the unique challenges presented by capillaries versus larger supplying and draining vessels, we critically assess opportunities and challenges in making OCTA a quantitative tool.

29 May 2020 in Journal of Biophotonics
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Jun ZhuJun Zhu
Jun Zhu
MBMarcel T. Bernucci
Marcel T. Bernucci
CMConrad W. Merkle
Conrad W. Merkle
VSVivek J. Srinivasan
Vivek J. Srinivasan

6 October 2020 in Light: Science & Applications
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Journal Article
Open access
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AKAaron M. Kho
Aaron M. Kho
TZTingwei Zhang
Tingwei Zhang
Jun ZhuJun Zhu
Jun Zhu
CMConrad W. Merkle
Conrad W. Merkle
VSVivek J. Srinivasan
Vivek J. Srinivasan
Across optics and photonics, excess intensity noise is often considered a liability. Here, we show that excess noise in broadband supercontinuum and superluminescent diode light sources encodes each spectral channel with unique intensity fluctuations, which actually serve a useful purpose. Specifically, we report that excess noise correlations can both characterize the spectral resolution of spectrometers and enable cross-calibration of their wavelengths across a broad bandwidth. Relative to previous methods that use broadband interferometry and narrow linewidth lasers to characterize and calibrate spectrometers, our approach is simple, comprehensive, and rapid enough to be deployed during spectrometer alignment. First, we employ this approach to aid alignment and reduce the depth-dependent degradation of the sensitivity and axial resolution in a spectrometer-based optical coherence tomography (OCT) system, revealing a new outer retinal band. Second, we achieve a pixel-to-pixel correspondence between two otherwise disparate spectrometers, enabling a robust comparison of their respective measurements. Thus, excess intensity noise has useful applications in optics and photonics.