Yuan Li

Prof. Dr. Yuan Li

orcid

Research Focus & Metrics

Academic Career Length

12Years (2015-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 December 2016 in Scientific Reports
Verified
Journal Article
Open access
SASamer G. Alam
Samer G. Alam
QZQiao Zhang
Qiao Zhang
NPNripesh Prasad
Nripesh Prasad
YLYuan Li
Yuan Li
SCSrikar Chamala
Srikar Chamala
Tanmay LeleTanmay Lele
Tanmay Lele
Mechanical integration of the nucleus with the extracellular matrix (ECM) is established by linkage between the cytoskeleton and the nucleus. This integration is hypothesized to mediate sensing of ECM rigidity, but parsing the function of nucleus-cytoskeleton linkage from other mechanisms has remained a central challenge. Here we took advantage of the fact that the LINC (linker of nucleoskeleton and cytoskeleton) complex is a known molecular linker of the nucleus to the cytoskeleton, and asked how it regulates the sensitivity of genome-wide transcription to substratum rigidity. We show that gene mechanosensitivity is preserved after LINC disruption, but reversed in direction. Combined with myosin inhibition studies, we identify genes that depend on nuclear tension for their regulation. We also show that LINC disruption does not attenuate nuclear shape sensitivity to substrate rigidity. Our results show for the first time that the LINC complex facilitates mechano-regulation of expression across the genome.

21 April 2015 in Proceedings of the National Academy of Sciences
Verified
Journal Article
Closed access
PDF file
SNSrujana Neelam
Srujana Neelam
TCT. J. Chancellor
T. J. Chancellor
YLYuan Li
Yuan Li
JNJeffrey A. Nickerson
Jeffrey A. Nickerson
Kyle RouxKyle Roux
Kyle Roux
Tanmay LeleTanmay Lele
Tanmay Lele
Significance: In a cell that is not actively moving, the shape of the nucleus and its central position are robustly maintained in a mechanical homeostasis. How nuclear shape and position are maintained despite the various types of intracellular forces that act on the nuclear surface is an open question. Dysregulated positioning and irregular nuclear shape are associated with a variety of human pathologies. In this paper we estimate the magnitude of the forces that are required to displace and deform the cell nucleus and identify the main molecules that resist these forces. Our results are important because they reveal how the nucleus has such a stable shape and position in the cell, despite the different forces acting on it.

1 August 2015 in Biophysical Journal
Verified
Journal Article
Closed access
YLYuan Li
Yuan Li
DLDavid Lovett
David Lovett
QZQiao Zhang
Qiao Zhang
SNSrujana Neelam
Srujana Neelam
RKRam Anirudh Kuchibhotla
Ram Anirudh Kuchibhotla
RDRichard B. Dickinson
Richard B. Dickinson

25 May 2017 in Journal of Cellular Physiology
Verified
Journal Article
Closed access
PDF file
VTVincent J. Tocco
Vincent J. Tocco
YLYuan Li
Yuan Li
KCKeith G. Christopher
Keith G. Christopher
JMJames H. Matthews
James H. Matthews
VAVarun Aggarwal
Varun Aggarwal
Tanmay LeleTanmay Lele
Tanmay Lele

27 July 2023 in Aging Cell
Verified
Journal Article
Open access
YLYuan Li
Yuan Li
LBLaura Berliocchi
Laura Berliocchi
Zhiquan LiZhiquan Li
Zhiquan Li
LRLene Juel Rasmussen
Lene Juel Rasmussen
Current research on human aging has largely been guided by the milestone paper “hallmarks of aging,” which were first proposed in the seminal 2013 paper by Lopez‐Otin et al. Most studies have focused on one aging hallmark at a time, asking whether the underlying molecular perturbations are sufficient to drive the aging process and its associated phenotypes. More recently, researchers have begun to investigate whether aging phenotypes are driven by concurrent perturbations in molecular pathways linked to not one but to multiple hallmarks of aging and whether they present different patterns in organs and systems over time. Indeed, preliminary results suggest that more complex interactions between aging hallmarks must be considered and addressed, if we are to develop interventions that successfully promote healthy aging and/or delay aging‐associated dysfunction and diseases. Here, we summarize some of the latest work and views on the interplay between hallmarks of aging, with a specific focus on mitochondrial dysfunction. Indeed, this represents a significant example of the complex crosstalk between hallmarks of aging and of the effects that an intervention targeted to a specific hallmark may have on the others. A better knowledge of these interconnections, of their cause‐effect relationships, of their spatial and temporal sequence, will be very beneficial for the whole aging research field and for the identification of effective interventions in promoting healthy old age.

20 August 2020 in Clinical Cancer Research
Verified
Journal Article
Open access
PDF file
CMCharles Marusak
Charles Marusak
VTVarsha Thakur
Varsha Thakur
YLYuan Li
Yuan Li
JFJuliano T. Freitas
Juliano T. Freitas
PZPatrick M. Zmina
Patrick M. Zmina
BBBarbara Bedogni
Barbara Bedogni
Purpose: The extracellular matrix (ECM) is an intriguing, yet understudied component of therapy resistance. Here, we investigated the role of ECM remodeling by the collagenase, MT1-MMP, in conferring resistance of v-Raf murine sarcoma viral oncogene homolog B1 (BRAF)-mutant melanoma to BRAF inhibitor (BRAFi) therapy. Experimental Design: Publicly available RNA-sequencing data and reverse phase protein array were used to determine the relevance of MT1-MMP upregulation in BRAFi-resistant melanoma in patients, patient-derived xenografts, and cell line–derived tumors. Short hairpin RNA (shRNA)-mediated knockdown of MT1-MMP, inhibition via the selective MT1-MMP/MMP2 inhibitor, ND322, or overexpression of MT1-MMP was used to assess the role of MT1-MMP in mediating resistance to BRAFi. Results: MT1-MMP was consistently upregulated in posttreatment tumor samples derived from patients upon disease progression and in melanoma xenografts and cell lines that acquired resistance to BRAFi. shRNA- or ND322-mediated inhibition of MT1-MMP synergized with BRAFi leading to resensitization of resistant cells and tumors to BRAFi. The resistant phenotype depends on the ability of cells to cleave the ECM. Resistant cells seeded in MT1-MMP uncleavable matrixes were resensitized to BRAFi similarly to MT1-MMP inhibition. This is due to the inability of cells to activate integrinβ1 (ITGB1)/FAK signaling, as restoration of ITGB1 activity is sufficient to maintain resistance to BRAFi in the context of MT1-MMP inhibition. Finally, the increase in MT1-MMP in BRAFi-resistant cells is TGFβ dependent, as inhibition of TGFβ receptors I/II dampens MT1-MMP overexpression and restores sensitivity to BRAF inhibition. Conclusions: BRAF inhibition results in a selective pressure toward higher expression of MT1-MMP. MT1-MMP is pivotal to an ECM-based signaling pathway that confers resistance to BRAFi therapy.